gn-transform-databases - Data transformers for GeneNetwork (particularly to RDF)

Age	Commit message (Collapse)	Author
2021-12-02	Document delete-substrings.	Arun Isaac
	* dump.scm (delete-substring): Add docstring.
2021-12-01	Deal with AvgMethodId = 0.	Arun Isaac
	* dump.scm (dump-info-files): Deal with AvgMethodId.
2021-12-01	Use InfoFileTitle instead of InfoPageTitle for dataset name.	Arun Isaac
	Not all datasets have a non-NULL InfoPageTitle field. * dump.scm (dump-info-files): Use InfoFileTitle instead of InfoPageTitle for dataset name.
2021-12-01	Extract name of dataset group.	Arun Isaac
	* dump.scm (dump-info-files): Extract name of dataset group.
2021-12-01	Do not link inbred-set to mapping-method.	Arun Isaac
	Not all inbred sets have a mapping method, and the mapping method of the inbred set has, so far, not been used anywhere. * dump.scm (mapping-method-name->id, dump-mapping-method): Mark as unused. (dump-inbred-set): Do not link inbred-set to mapping-method.
2021-12-01	Allow N/A avg method.	Arun Isaac
	* dump.scm (dump-avg-method): Allow N/A in name. (dump-info-files): Allow N/A in avg-method-name. (avg-method-name->id): Replace / with _.
2021-12-01	Remove gn:geoSeries when value starts with "No Geo Series...".	Arun Isaac
	* dump.scm (dump-info-files): Remove gn:geoSeries when value starts with "No Geo Series...".
2021-12-01	In the gn: prefix, use http instead of https.	Arun Isaac
	* dump.scm: In the gn:prefix, use http instead of https.
2021-12-01	Remove dependency on python-rdflib.	Arun Isaac
	* guix.scm: Remove python-rdflib. (python-berkeleydb, python-rdflib-6): Delete variables.
2021-12-01	Replace guix environment with guix shell.	Arun Isaac
	guix environment is deprecated. * guix.scm: Replace guix environment with guix shell.
2021-12-01	Remove unrequired rdfs: prefix.	Arun Isaac
	* dump.scm: Remove rdfs: prefix.
2021-11-11	Fix unbalanced parentheses.	Arun Isaac
	Parentheses became unbalanced due to my careless git use. * dump.scm: Fix unbalanced parentheses.
2021-11-09	Use upstream guile-dbi and guile-dbd-mysql.	Arun Isaac
	* guix.scm: Do not prefix guix: in importing (gnu packages guile-xyz). (guile-dbi, guile-dbi-bootstrap, guile-dbd-mysql): Delete variables.
2021-09-14	Dump InfoFiles.	Arun Isaac
	* dump.scm (dump-info-files): New function. [main]: Call dump-info-files.
2021-09-14	Abstract out deleting substrings.	Arun Isaac
	* dump.scm (delete-substrings): New function. (dump-publication): Replace string-replace-substring with delete-substrings.
2021-09-14	Update python-rdflib package.	Arun Isaac
	* guix.scm: Import (gnu packages dbm), (guix build-system python) and (guix download). (python-berkeleydb, python-rdflib-6): New variables. [mainfest]: Replace python-rdflib with python-rdflib-6. Remove python-urrlib3.
2021-09-14	Update guile-dbi package.	Arun Isaac
	* guix.scm (guile-dbi): Update to 2.1.8. (guile-dbi-bootstrap): Inherit from guile-dbi instead of guix:guile-dbi. Update comments about contributing upstream.
2021-09-14	Do not define sub-properties of rdfs:label.	Arun Isaac
	* dump.scm (dump-publication, dump-tissue): Do not define any property to be a sub-property of rdfs:label.
2021-09-14	Dump GeneChip.	Arun Isaac
	* dump.scm (gene-chip-name->id, dump-gene-chip): New functions. [main]: Call dump-gene-chip.
2021-09-14	Dump AvgMethod.	Arun Isaac
	* dump.scm (avg-method-name->id, dump-avg-method): New functions. [main]: Call dump-avg-method.
2021-09-14	Delete unused camel->kebab function.	Arun Isaac
	* dump.scm (camel->kebab): Delete function.
2021-09-09	Dump Investigators.	Arun Isaac
	* dump.scm (fix-email-id, investigator-email->id, dump-investigators): New functions. Invoke dump-investigators.
2021-09-09	Dump Tissue.	Arun Isaac
	* dump.scm (tissue-short-name->id, dump-tissue): New functions. Invoke dump-tissue.
2021-09-09	Add foaf prefix.	Arun Isaac
	* dump.scm: Add foaf prefix.
2021-09-09	Abstract out prefix entries.	Arun Isaac
	* dump.scm (prefix): New function. Use prefix.
2021-08-27	Initial commit	Arun Isaac