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2023-08-02README: add link to gemtextPjotr Prins
2023-08-02Added missing prefix to species.ttlPjotr Prins
2023-08-02species.ttl: added shortNamePjotr Prins
2023-08-02Species: added commentPjotr Prins
2023-08-02species: add entryPjotr Prins
2023-07-31Remove duplicate entries for alias/symbol/name when dumping strains•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Fix terms in inbredSet dump•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Update how MappingMethod, InbredSet and AvgMethod are modelled•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Update how strains are modelled•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Update how species are modelled•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Use the correct name for Monkey (Macaca nemestrina)•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Use remap-identifiers•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Merge branch 'master' into self-document-while-dumpingBonfaceKilz
2023-07-31Pass a default dump-directory when dumping table metadata•••* dump/schema-dump.scm (dump-data-table): Add extra optional arg "default-dump-directory". Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Add missing imports•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Add gnc: prefix•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Replace "gn-term" with "gnt" prefix•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Use "string->binomial-name" to id species•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Add new method "string->binomial-name"•••* dump/triples.scm: Export string->binomial-name. (string->binomial-name): New procedure. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Add missing import•••* dump/strings.scm: Import (ice-9 textual-ports) Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Replace set! mutations with an alist•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Use correct URL for rdf prefix•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Replace "?s ?p ?o" with "*"•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Update some minor formatting•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-31Convert subject into a string if it's a symbol•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Add gnc: prefix•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Replace "gn-term" with "gnt" prefix•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Use "string->binomial-name" to id species•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Add new method "string->binomial-name"•••* dump/triples.scm: Export string->binomial-name. (string->binomial-name): New procedure. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Update wikidata species schema•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Add missing import•••* dump/strings.scm: Import (ice-9 textual-ports) Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Replace set! mutations with an alist•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Use correct URL for rdf prefix•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Replace "?s ?p ?o" with "*"•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Update some minor formatting•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Convert subject into a string if it's a symbol•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Update wikidata metadata•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Add dct: prefix to genotype dump•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Update phenotype dumpMunyoki Kilyungi
2023-07-30Make define-dump take extra args as key•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Dump prefixes correctly when auto-generating docs•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Dump probesetfreeze metadata using new metadataMunyoki Kilyungi
2023-07-30Dump probeset-metadata using the new syntax•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Dump genotypes with the new syntax•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Use "gn:" and "gn-term:" when dumping phenotypes•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Replace "publication:" with "pubmed:"•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Use "gn:" and "gn-terms" prefixes•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Make 'inputs' and 'outputs' fields lists•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Remove unnecessary prefixes•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
2023-07-30Use a min of 4 should the schema triples be many•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> Munyoki Kilyungi
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