| Age | Commit message (Expand) | Author |
|---|---|---|
| 2024-10-16 | Wrap WIKI comment in '...'@en and escape any #\' character....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-10-14 | Use short-form RDF triples....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-10-08 | Replace "if" statement with "match."...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-10-08 | Re-model NCBI tranform....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-12 | Re-introduce unique identifiers for RIF metadata....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-12 | Remove extra nodes for symbols....In GN, symbols don't have metadata. As such, for the moment, just use the string. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-12 | Add extra annotations for gene symbols....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-09 | Use "rdfs:label" to represent human readable format of WIKI....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-06 | Use predicateObject Lists with a blank-node to model GeneRIF....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-08-28 | Replace blank-nodes for gn-genewiki-entries with unique identifiers....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-08-16 | Correctly check for the initial when transforming GeneRIF....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-08-16 | Transform VersionIds in geneWiki transform correctly....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-08-16 | Delete un-used functions during generif transform....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-08-14 | Correctly check for blank string in GeneRIF.initial....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-08-14 | Remove Investigators from GeneRIF join....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-08-14 | Apply formatting....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-08-14 | Add email to WIKI transform....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-08-14 | Replace [] with () in let* form....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-08-14 | Remove 'gene: ontology from GeneId prefix....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-08-14 | Make symbol field a multiset in probeset transform....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-08-14 | Add missing RDF prefix during ProbeSet transform....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-07-30 | Update GeneRIF metadata with "reason" for modification....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-07-30 | Add "gnt:initial" to GeneRIF metadata comments....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-07-30 | Update GeneRIF metadata to contain "dct:identifier" for each comment....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-07-30 | Use correct term for RIF id and annotate it with an int....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-07-30 | Update GeneRIF metadata to contain the version-id....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-07-29 | Add a script for generating the TTL files....* generate-ttl-files.scm: New script. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-07-19 | Add comment....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-07-15 | Add missing RIF symbols....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-07-10 | Replace "FIXME" with relevant info in the docs....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-07-10 | Unfill paragraphs....Don't break paragraphs. It makes future edits easier to diff. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-07-10 | Document running actual transformation scripts...Document an example command to invoke to enable the actual transformation of the data to be done. This will need to be cleaned up, and the commands will also need to check for the appropriate arguments before attempting to run in the first place. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Frederick Muriuki Muriithi |
| 2024-07-10 | Rename script: Give file a more relevant name....Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Frederick Muriuki Muriithi |
| 2024-07-10 | Replace "dump" -> "transform" where relevant....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-07-10 | Remove the "generif-data-file" from the documentation....Right now, we get the generif metadata from the GeneRIF_BASIC table. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-07-10 | Provide sample JSON file and update instruction in docs...The documentation for generating a transformation of a JSON file into a Terse RDF Triple Language (Turtle) form was incomplete. This commit provides a sample JSON file that can be used to demonstrate the working of the code. Reviewed-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Frederick Muriuki Muriithi |
| 2024-05-20 | Add pointers to git metadata in RDF for the dataset metadata....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-05-15 | manifest.scm: Use upstream ccwl....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-05-15 | Use a set to represent a phenotype's owner....The owners in the database is not a consistent comma separated list. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-05-15 | Replace rdfs:label with gnt:traitId for Phenotypes. | Munyoki Kilyungi |
| 2024-02-15 | Refactor how changes are committed and pushed....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-02-15 | Remove call to string-append when defining dir-name local var....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-02-15 | Filter out files that only have "None"....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-02-14 | Capitalize the first string of every path....This is done to match the RDF identifier. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-02-13 | Convert extra dataset metadata to text-files....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-02-13 | Remove more fields from dataset's RDF output....These are: "Experiment_Type", "Contributors" & "Citation" which are already in RTF form. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-02-13 | Fix missplaced parens....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-02-09 | Re-add triplets that describe dataset terms....These triplets will be re-used when constructing the json-ld endpoints for GN3. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-02-09 | Update push and reset git commands....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-02-09 | Use correct path to the datasets directory....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
 |
index : gn-transform-databases | |
| Data transformers for GeneNetwork (particularly to RDF) |
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