| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 13 days | sed -i 's|gnt:genetic-type|gnt:genetic_type|g' ./*/**.scm ./*scm | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2026-01-14 | Replace camelCase with snake_case. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2026-01-14 | Replace "genenetwork.org/" with "rdf.genenetwork.org/v1/". | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2026-01-13 | Fix comment for gnt:belongs_to_species. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2026-01-13 | Trigger CD re-build. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2026-01-13 | Switch to versioned rdf.genenetwork namespace. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2026-01-13 | Snake case variable. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2026-01-13 | Explicitly set the connection string to utf8. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2026-01-13 | Add extra string utility functions. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2026-01-13 | Strictly follow PN_LOCAL rules when constructing qnames. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2026-01-13 | Have an ID function as the default func for string->identifier. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2026-01-13 | Update schema for several transforms. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2026-01-13 | Use "-" in qnames. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2026-01-13 | Update how the species/inbredsets are transformed. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2026-01-13 | Import virtuoso-ose and mariadb from (gnu packages databases). | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2026-01-13 | Delete duplicated function. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2026-01-13 | Move remap-species-identifiers to (transform triples). | Munyoki Kilyungi | |
| * examples/classification.scm (remap-species-identifiers): Move this... * transform/triples.scm: ... here. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2026-01-13 | Snake case gn/gnt/gnc identifiers. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2026-01-13 | Update documentation. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-09-03 | Use the guile command directly and update the load-path explicitly. | Frederick Muriuki Muriithi | |
| Avoid using the './pre-inst-env' file that will probably not exist in installed modules. Instead, prefer the explicit path, relative to the "entry-point" file, that will be more consistent, even in an install. | |||
| 2025-03-24 | Trigger new transforms. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-03-18 | Trigger new transforms. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-03-18 | Trigger new transforms. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-03-18 | Trigger new transforms. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-03-17 | Trigger new transforms. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-03-12 | Trigger new transforms. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2025-01-13 | Test post-receive hook. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-12-09 | Reset old generif dump to: 0bbf317208b8. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-12-09 | Add old generif file. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-10-31 | Revert "Rename %sparql-port -> %sparql-http-server-port." | Munyoki Kilyungi | |
| This reverts commit 69e3f47fa29f9f967dfa66860edaec51c0de0125. | |||
| 2024-10-31 | Rename %sparql-port -> %sparql-http-server-port. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-10-31 | Update generate-ttl-files.scm | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-10-31 | Make documentation? and data? optional in special-forms. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-10-28 | Replace (guix build utils) functions with guile in-built ones. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-10-21 | Use (guix build utils) to generate, validate, and version TTL files. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-10-17 | Add new transform for table schema. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-10-17 | Rename schema-dump.scm -> schema.scm. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-10-16 | Delete uuid.scm. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-10-16 | Skip running ./examples/dataset-metadata-git.scm | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-10-16 | Delete probeset transform. | Munyoki Kilyungi | |
| This is still a WIP; and ATM this examples folder is being tested out for a CI job, and the probeset transform is one of the longest. Will re-add it later. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-10-16 | Wrap WIKI comment in '...'@en and escape any #\' character. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-10-14 | Use short-form RDF triples. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-10-08 | Replace "if" statement with "match." | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-10-08 | Re-model NCBI tranform. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-12 | Re-introduce unique identifiers for RIF metadata. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-12 | Remove extra nodes for symbols. | Munyoki Kilyungi | |
| In GN, symbols don't have metadata. As such, for the moment, just use the string. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-12 | Add extra annotations for gene symbols. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-09 | Use "rdfs:label" to represent human readable format of WIKI. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-06 | Use predicateObject Lists with a blank-node to model GeneRIF. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-08-28 | Replace blank-nodes for gn-genewiki-entries with unique identifiers. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
 |
index : gn-transform-databases | |
| Data transformers for GeneNetwork (particularly to RDF) |
| about summary refs log tree commit diff |