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Data transformers for GeneNetwork (particularly to RDF)
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2024-10-21
Use (guix build utils) to generate, validate, and version TTL files.
Munyoki Kilyungi
2024-10-17
Add new transform for table schema.
Munyoki Kilyungi
2024-10-17
Rename schema-dump.scm -> schema.scm.
Munyoki Kilyungi
2024-10-16
Delete uuid.scm.
Munyoki Kilyungi
2024-10-16
Skip running ./examples/dataset-metadata-git.scm
Munyoki Kilyungi
2024-10-16
Delete probeset transform.
Munyoki Kilyungi
2024-10-16
Wrap WIKI comment in '...'@en and escape any #\' character.
Munyoki Kilyungi
2024-10-14
Use short-form RDF triples.
Munyoki Kilyungi
2024-10-08
Replace "if" statement with "match."
Munyoki Kilyungi
2024-10-08
Re-model NCBI tranform.
Munyoki Kilyungi
2024-09-12
Re-introduce unique identifiers for RIF metadata.
Munyoki Kilyungi
2024-09-12
Remove extra nodes for symbols.
Munyoki Kilyungi
2024-09-12
Add extra annotations for gene symbols.
Munyoki Kilyungi
2024-09-09
Use "rdfs:label" to represent human readable format of WIKI.
Munyoki Kilyungi
2024-09-06
Use predicateObject Lists with a blank-node to model GeneRIF.
Munyoki Kilyungi
2024-08-28
Replace blank-nodes for gn-genewiki-entries with unique identifiers.
Munyoki Kilyungi
2024-08-16
Correctly check for the initial when transforming GeneRIF.
Munyoki Kilyungi
2024-08-16
Transform VersionIds in geneWiki transform correctly.
Munyoki Kilyungi
2024-08-16
Delete un-used functions during generif transform.
Munyoki Kilyungi
2024-08-14
Correctly check for blank string in GeneRIF.initial.
Munyoki Kilyungi
2024-08-14
Remove Investigators from GeneRIF join.
Munyoki Kilyungi
2024-08-14
Apply formatting.
Munyoki Kilyungi
2024-08-14
Add email to WIKI transform.
Munyoki Kilyungi
2024-08-14
Replace [] with () in let* form.
Munyoki Kilyungi
2024-08-14
Remove 'gene: ontology from GeneId prefix.
Munyoki Kilyungi
2024-08-14
Make symbol field a multiset in probeset transform.
Munyoki Kilyungi
2024-08-14
Add missing RDF prefix during ProbeSet transform.
Munyoki Kilyungi
2024-07-30
Update GeneRIF metadata with "reason" for modification.
Munyoki Kilyungi
2024-07-30
Add "gnt:initial" to GeneRIF metadata comments.
Munyoki Kilyungi
2024-07-30
Update GeneRIF metadata to contain "dct:identifier" for each comment.
Munyoki Kilyungi
2024-07-30
Use correct term for RIF id and annotate it with an int.
Munyoki Kilyungi
2024-07-30
Update GeneRIF metadata to contain the version-id.
Munyoki Kilyungi
2024-07-29
Add a script for generating the TTL files.
Munyoki Kilyungi
2024-07-19
Add comment.
Munyoki Kilyungi
2024-07-15
Add missing RIF symbols.
Munyoki Kilyungi
2024-07-10
Replace "FIXME" with relevant info in the docs.
Munyoki Kilyungi
2024-07-10
Unfill paragraphs.
Munyoki Kilyungi
2024-07-10
Document running actual transformation scripts
Frederick Muriuki Muriithi
2024-07-10
Rename script: Give file a more relevant name.
Frederick Muriuki Muriithi
2024-07-10
Replace "dump" -> "transform" where relevant.
Munyoki Kilyungi
2024-07-10
Remove the "generif-data-file" from the documentation.
Munyoki Kilyungi
2024-07-10
Provide sample JSON file and update instruction in docs
Frederick Muriuki Muriithi
2024-05-20
Add pointers to git metadata in RDF for the dataset metadata.
Munyoki Kilyungi
2024-05-15
manifest.scm: Use upstream ccwl.
Munyoki Kilyungi
2024-05-15
Use a set to represent a phenotype's owner.
Munyoki Kilyungi
2024-05-15
Replace rdfs:label with gnt:traitId for Phenotypes.
Munyoki Kilyungi
2024-02-15
Refactor how changes are committed and pushed.
Munyoki Kilyungi
2024-02-15
Remove call to string-append when defining dir-name local var.
Munyoki Kilyungi
2024-02-15
Filter out files that only have "None".
Munyoki Kilyungi
2024-02-14
Capitalize the first string of every path.
Munyoki Kilyungi
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