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2021-12-16Make define-dump syntax more concise.Arun Isaac
* dump.scm (field->key, field->assoc-ref, collect-fields): New functions. (define-dump): Redefine with more concise syntax. * dump.scm (dump-species, dump-strain, dump-mapping-method, dump-inbred-set, dump-phenotype, dump-publication, dump-publish-xref, dump-tissue, dump-investigators, dump-avg-method, dump-gene-chip, dump-info-files): Use new define-dump syntax. (default-metadata-proc): Delete function. * .dir-locals.el (scheme-mode): Indent triples form correctly.
2021-12-11Visualize schema.Arun Isaac
* .dir-locals.el (scheme-mode): Indent set-table-columns correctly. * dump.scm: Import (srfi srfi-9 gnu). (%database-name): New variable. (<table>): New type. (tables, string-remove-suffix-ci, human-units, graph->dot, dump-schema): New functions. Invoke dump-schema. * guix.scm: Import (gnu packages bioinformatics). Add ccwl, graphviz and guile-libyaml to the manifest.
2021-12-04Add emacs directory local variables.Arun Isaac
* .dir-locals.el: New file.