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-rwxr-xr-xexamples/dump-dataset-metadata.scm2
-rwxr-xr-xexamples/dump-genotype.scm2
-rwxr-xr-xexamples/dump-phenotype.scm2
-rwxr-xr-xexamples/dump-probeset-metadata.scm3
4 files changed, 5 insertions, 4 deletions
diff --git a/examples/dump-dataset-metadata.scm b/examples/dump-dataset-metadata.scm
index 4747700..ebaea52 100755
--- a/examples/dump-dataset-metadata.scm
+++ b/examples/dump-dataset-metadata.scm
@@ -91,7 +91,7 @@
(left-join Investigators "USING (InvestigatorId)")
(left-join AvgMethod "USING (AvgMethodId)")
(left-join GeneChip "USING (GeneChipId)"))
- "WHERE GN_AccesionId IS NOT NULL")
+ "WHERE GN_AccesionId IS NOT NULL AND ((PublishFreeze.public > 0 AND PublishFreeze.confidentiality < 1) OR (GenoFreeze.public > 0 AND GenoFreeze.confidentiality < 1) OR (ProbeSetFreeze.public > 0 AND ProbeSetFreeze.confidentiality < 1))")
(schema-triples
(gn:datasetOfInvestigator rdfs:domain gn:dataset)
(gn:datasetOfInvestigator rdfs:range foaf:Person)
diff --git a/examples/dump-genotype.scm b/examples/dump-genotype.scm
index cffa917..53d101b 100755
--- a/examples/dump-genotype.scm
+++ b/examples/dump-genotype.scm
@@ -27,7 +27,7 @@
(tables (GenoFreeze
(left-join InfoFiles "ON InfoFiles.InfoPageName = GenoFreeze.Name")
(left-join InbredSet "ON GenoFreeze.InbredSetId = InbredSet.InbredSetId"))
- "WHERE GenoFreeze.public > 0 AND InfoFiles.InfoPageName IS NULL")
+ "WHERE GenoFreeze.public > 0 AND GenoFreeze.confidentiality < 1 AND InfoFiles.InfoPageName IS NULL")
(schema-triples
(gn:datasetOfInbredSet rdfs:range gn:inbredSet)
(gn:genotypeDataset rdfs:subPropertyOf gn:dataset)
diff --git a/examples/dump-phenotype.scm b/examples/dump-phenotype.scm
index 0b46a14..113c367 100755
--- a/examples/dump-phenotype.scm
+++ b/examples/dump-phenotype.scm
@@ -28,7 +28,7 @@
(tables (PublishFreeze
(left-join InfoFiles "ON InfoFiles.InfoPageName = PublishFreeze.Name")
(left-join InbredSet "ON PublishFreeze.InbredSetId = InbredSet.InbredSetId"))
- "WHERE PublishFreeze.public > 0 AND InfoFiles.InfoPageName IS NULL")
+ "WHERE PublishFreeze.public > 0 AND PublishFreeze.confidentiality < 1 AND InfoFiles.InfoPageName IS NULL")
(schema-triples
(gn:datasetOfInbredSet rdfs:range gn:inbredSet)
(gn:name rdfs:range rdfs:Literal)
diff --git a/examples/dump-probeset-metadata.scm b/examples/dump-probeset-metadata.scm
index ae9931c..b3f4165 100755
--- a/examples/dump-probeset-metadata.scm
+++ b/examples/dump-probeset-metadata.scm
@@ -23,7 +23,8 @@
(define-dump dump-probeset-metadata
(tables (ProbeSetXRef
(left-join ProbeSet "ON ProbeSetXRef.ProbeSetId = ProbeSet.Id")
- (left-join ProbeSetFreeze "ON ProbeSetXRef.ProbeSetFreezeId = ProbeSetFreeze.Id")))
+ (left-join ProbeSetFreeze "ON ProbeSetXRef.ProbeSetFreezeId = ProbeSetFreeze.Id"))
+ "WHERE ProbeSetFreeze.public > 0 AND ProbeSetFreeze.confidentiality < 1")
(schema-triples
(gn:probesetData rdfs:range gn:probeset)
(gn:hasProbeset rdfs:range rdfs:Literal))