diff options
Diffstat (limited to 'examples')
| -rwxr-xr-x | examples/dump-species-metadata.scm | 26 |
1 files changed, 21 insertions, 5 deletions
diff --git a/examples/dump-species-metadata.scm b/examples/dump-species-metadata.scm index c3b62a6..ebfc1a2 100755 --- a/examples/dump-species-metadata.scm +++ b/examples/dump-species-metadata.scm @@ -31,13 +31,16 @@ (define-dump dump-species (tables (Species)) (schema-triples - (gnc:species rdf:type owl:Class) + (gnc:species a skos:Concept) + (gnc:species skos:description "This is a set of controlled terms that are used to describe a given species") + (gnc:species skos:broader gnc:family) (gnt:name a owl:ObjectProperty) (gnt:name rdfs:domain gnc:species) (gnt:binomialName a owl:ObjectProperty) (gnt:binomialName rdfs:domain gnc:species) (gnt:family a owl:ObjectProperty) (gnt:family rdfs:domain gnc:species) + (gnt:family skos:definition "This resource belongs to this family") (gnt:organism a owl:ObjectProperty) (gnt:organism rdfs:domain gnc:species) (gnt:shortName a owl:ObjectProperty) @@ -58,10 +61,15 @@ (tables (Strain (left-join Species "ON Strain.SpeciesId = Species.SpeciesId"))) (schema-triples - (gnc:strain rdf:subClassOf gnc:species) + (gnc:strain skos:broader gnc:species) (gnt:species rdfs:domain gnc:strain) + (gnt:species skos:definition "This resource belongs to this species") + (gnt:species a owl:ObjectProperty) + (gnt:species skos:definition "This resource belongs to this species") (gnt:alias rdfs:domain gnc:strain) - (gnt:symbol rdfs:domain gnc:strain)) + (gnt:alias a owl:ObjectProperty) + (gnt:symbol rdfs:domain gnc:strain) + (gnt:symbol a owl:ObjectProperty)) (triples (string->identifier "" (regexp-substitute/global @@ -84,7 +92,8 @@ (define-dump dump-mapping-method (tables (MappingMethod)) (schema-triples - (gnc:mappingMethod rdf:type owl:Class)) + (gnc:mappingMethod a skos:Concept) + (gnc:mappingMethod skos:definition "Terms that decribe mapping/normalization methods used in GeneNetwork")) (triples (string->identifier "mappingMethod" (field MappingMethod Name)) (set rdf:type 'gnc:mappingMethod) @@ -96,12 +105,19 @@ (left-join MappingMethod "ON InbredSet.MappingMethodId=MappingMethod.Id"))) (schema-triples - (gnc:inbredSet rdf:subClassOf gnc:species) + (gnc:inbredSet skos:broader gnc:species) + (gnc:inbredSet skos:definition "A set of terms used to describe an inbred set") + (gnt:geneticType a owl:ObjectProperty) (gnt:geneticType rdfs:domain gnc:inbredSet) + (gnt:code a owl:ObjectProperty) (gnt:code rdfs:domain gnc:inbredSet) + ;; Already defined as an owl prop in dump-species (gnt:family rdfs:domain gnc:inbredSet) + (gnt:phenotype a owl:ObjectProperty) (gnt:phenotype rdfs:domain gnc:inbredSet) + (gnt:genotype a owl:ObjectProperty) (gnt:genotype rdfs:domain gnt:inbredSet) + (gnt:mappingMethod a owl:ObjectProperty) (gnt:mappingMethod rdfs:domain gnc:inbredSet)) (triples (string->identifier "" (field InbredSet Name) |