diff options
Diffstat (limited to 'examples/dump-probeset.scm')
| -rwxr-xr-x | examples/dump-probeset.scm | 22 |
1 files changed, 0 insertions, 22 deletions
diff --git a/examples/dump-probeset.scm b/examples/dump-probeset.scm index e659120..4fa030f 100755 --- a/examples/dump-probeset.scm +++ b/examples/dump-probeset.scm @@ -22,8 +22,6 @@ (define-dump dump-probeset (tables (ProbeSet - (left-join ProbeSetXRef "ON ProbeSetXRef.ProbeSetId = ProbeSet.Id") - (left-join ProbeSetFreeze "ON ProbeSetXRef.ProbeSetFreezeId = ProbeSetFreeze.Id") (left-join GeneChip "ON GeneChip.Id = ProbeSet.ChipId"))) (schema-triples (gn:name rdfs:range rdfs:Literal)) @@ -31,26 +29,6 @@ 'probeset: (field ("IFNULL(ProbeSet.Name, ProbeSet.Id)" name))) - (set gn:probesetOfDataset - (ontology - 'probeset: - (regexp-substitute/global - #f "[^A-Za-z0-9:]" - (field ("IFNULL(ProbeSetFreeze.Name, '')" DatasetName)) - 'pre "_" 'post))) - (set gn:mean (annotate-field (field ("IFNULL(ProbeSetXRef.mean, '')" mean)) - '^^xsd:double)) - (set gn:se (annotate-field (field ("IFNULL(ProbeSetXRef.se, '')" se)) - '^^xsd:double)) - (set gn:LRS (annotate-field (field ("IFNULL(ProbeSetXRef.LRS, '')" LRS)) - '^^xsd:double)) - (set gn:pValue (annotate-field (field ("IFNULL(ProbeSetXRef.pValue, '')" pValue)) - '^^xsd:double)) - (set gn:additive (annotate-field (field ("IFNULL(ProbeSetXRef.additive, '')" additive)) - '^^xsd:double)) - (set gn:h2 (annotate-field (field ("IFNULL(ProbeSetXRef.h2, '')" h2)) - '^^xsd:float)) - (set gn:locus (field ProbeSetXRef Locus)) (set gn:chipOf (string->identifier "platform" (field GeneChip Name))) (set gn:name (field ProbeSet Name)) (set gn:symbol (field ProbeSet Symbol)) |