diff options
Diffstat (limited to 'examples/dump-phenotype.scm')
| -rwxr-xr-x | examples/dump-phenotype.scm | 7 |
1 files changed, 4 insertions, 3 deletions
diff --git a/examples/dump-phenotype.scm b/examples/dump-phenotype.scm index 08d5127..5f8cd94 100755 --- a/examples/dump-phenotype.scm +++ b/examples/dump-phenotype.scm @@ -91,9 +91,10 @@ (set gn:sequence (annotate-field (field PublishXRef Sequence) '^^xsd:int)) (set gn:phenotypeOfDataset (ontology 'dataset: - (regexp-substitute/global #f "[^A-Za-z0-9:]" - (field PublishFreeze Name) - 'pre "_" 'post))) + (regexp-substitute/global + #f "[^A-Za-z0-9:]" + (field ("IFNULL(PublishFreeze.Name, '')" DatasetName)) + 'pre "_" 'post))) (set gn:phenotypeOfPublication (let ((pmid (field ("IF(Publication.PubMed_ID IS NULL, '', CONVERT(Publication.PubMed_Id, INT))" |