diff options
| -rwxr-xr-x | examples/dataset-metadata.scm | 53 |
1 files changed, 2 insertions, 51 deletions
diff --git a/examples/dataset-metadata.scm b/examples/dataset-metadata.scm index fba04ce..442663a 100755 --- a/examples/dataset-metadata.scm +++ b/examples/dataset-metadata.scm @@ -110,9 +110,6 @@ (gnt:hasTissue rdfs:domain dcat:Dataset) (gnt:hasTissue a owl:ObjectProperty) (gnt:hasTissue skos:definition "Tissues this resource has") - (gnt:hasTissueInfo rdfs:domain dcat:Dataset) - (gnt:hasTissueInfo a owl:ObjectProperty) - (gnt:hasTissueInfo skos:definition "Metadata about Tissue for this resource") (gnt:usesNormalization rdfs:domain dcat:Dataset) (gnt:usesNormalization a owl:ObjectProperty) (gnt:usesNormalization skos:definition "Normalization techniques this resource has") @@ -122,34 +119,10 @@ (gnt:hasGeoSeriesId rdfs:domain dcat:Dataset) (gnt:hasGeoSeriesId a owl:ObjectProperty) (gnt:hasGeoSeriesId skos:definition "id of record in NCBI database") - (gnt:hasExperimentDesignInfo rdfs:domain dcat:Dataset) - (gnt:hasExperimentDesignInfo rdfs:label "Experiment Design") - (gnt:hasExperimentDesignInfo a owl:ObjectProperty) - (gnt:hasExperimentDesignInfo skos:definition "Information about how the experiment was designed") - (gnt:hasNotes rdfs:domain dcat:Dataset) - (gnt:hasNotes a owl:ObjectProperty) - (gnt:hasNotes rdfs:label "Notes") - (gnt:hasNotes skos:definition "Extra Notes about this dataset") - (gnt:hasDataProcessingInfo rdfs:domain dcat:Dataset) - (gnt:hasDataProcessingInfo rdfs:label "About Data Processing") - (gnt:hasDataProcessingInfo a owl:ObjectProperty) - (gnt:hasDataProcessingInfo skos:definition "Information about how this dataset was processed") - (gnt:hasPlatformInfo rdfs:domain dcat:Dataset) - (gnt:hasPlatformInfo a owl:ObjectProperty) - (gnt:hasPlatformInfo rdfs:label "About Platform") - (gnt:hasPlatformInfo skos:definition "Information about the platform that was used with this dataset") - (gnt:hasCaseInfo rdfs:domain dcat:Dataset) - (gnt:hasCaseInfo rdfs:label "About Case") - (gnt:hasCaseInfo a owl:ObjectProperty) - (gnt:hasCaseInfo skos:definition "Information about the cases used in this platform") (gnt:hasExperimentType rdfs:domain dcat:Dataset) (gnt:hasExperimentType rdfs:label "Experiment Type Metadata") (gnt:hasExperimentType a owl:ObjectProperty) - (gnt:hasExperimentType skos:definition "Information about the experiment type") - (gnt:hasAcknowledgement rdfs:domain dcat:Dataset) - (gnt:hasAcknowledgement rdfs:label "Acknowledgement") - (gnt:hasAcknowledgement a owl:ObjectProperty) - (gnt:hasAcknowledgement skos:definition "People to acknowledge")) + (gnt:hasExperimentType skos:definition "Information about the experiment type")) (triples (string->identifier "" (regexp-substitute/global #f "[^A-Za-z0-9:]" (field InfoFiles InfoPageName) @@ -210,8 +183,6 @@ (set gnt:usesPlatform (string->identifier "platform" (field GeneChip Name GeneChip))) - (set dct:description - (sanitize-rdf-string (field Datasets Summary))) (set gnt:hasGeoSeriesId (let ((s (string-match "GSE[0-9]*" @@ -219,24 +190,6 @@ (if s (ontology 'geoSeries: (match:substring s)) ""))) - (set gnt:hasTissueInfo - (sanitize-rdf-string (field Datasets AboutTissue))) - (set gnt:hasContentInfo (sanitize-rdf-string (field InfoFiles Specifics))) - (set gnt:hasCaseInfo - (sanitize-rdf-string - (field Datasets AboutCases))) - (set gnt:hasPlatformInfo - (sanitize-rdf-string - (field Datasets AboutPlatform))) - (set gnt:hasDataProcessingInfo - (sanitize-rdf-string - (field Datasets AboutDataProcessing))) - (set gnt:hasNotes - (sanitize-rdf-string - (field Datasets Notes))) - (set gnt:hasExperimentDesignInfo - (sanitize-rdf-string - (field Datasets ExperimentDesign))) (set dct:creator (sanitize-rdf-string (field Datasets Contributors))) @@ -245,9 +198,7 @@ (regexp-substitute/global #f "^[Nn]one$" (field Datasets Citation) - ""))) - (set gnt:hasAcknowledgement (sanitize-rdf-string - (field Datasets Acknowledgment))))) + ""))))) ;; These are phenotype datasets that don't have Infofile metadata (define-transformer publishfreeze |