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| -rw-r--r-- | README.md | 8 |
1 files changed, 8 insertions, 0 deletions
@@ -21,6 +21,8 @@ Build the sources. $ make ``` +## Set up connection parameters + Describe the database connection parameters in a file *conn.scm* file as shown below. Take care to replace the placeholders within angle brackets with the appropriate values. @@ -40,6 +42,8 @@ with the appropriate values. (sparql-port . <sparql-endpoint-port-here>)) ``` +## Dump the database + Then, to dump the database to \~/data/dump, run ``` shell @@ -50,6 +54,8 @@ Make sure there is enough free space! It\'s best to dump the database on penguin2 where disk space and bandwidth are not significant constraints. +## Validate and load dump + Then, validate the dumped RDF using `rapper` and load it into virtuoso. This will load the dumped RDF into the `http://genenetwork.org` graph, and will delete all pre-existing data @@ -60,6 +66,8 @@ $ rapper --input turtle --count ~/data/dump/dump.ttl $ ./pre-inst-env ./load-rdf.scm conn.scm ~/data/dump/dump.ttl ``` +## Visualize schema + Now, you may query virtuoso to visualize the SQL and RDF schema. ``` shell |