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authorMunyoki Kilyungi2023-08-21 14:54:21 +0300
committerMunyoki Kilyungi2023-08-21 14:56:57 +0300
commit51b3c0548c98e0bc05e11a89cbf6b75d31b9f8d5 (patch)
treeab3d7c6f589ed8480f0a9d451566681bcfd8eaaf /examples/dump-tissue.scm
parent849874fdfe11003f05abe5f82efde974a8c8a388 (diff)
downloadgn-transform-databases-51b3c0548c98e0bc05e11a89cbf6b75d31b9f8d5.tar.gz
Remove "dump-" prefix
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'examples/dump-tissue.scm')
-rwxr-xr-xexamples/dump-tissue.scm50
1 files changed, 0 insertions, 50 deletions
diff --git a/examples/dump-tissue.scm b/examples/dump-tissue.scm
deleted file mode 100755
index 3658a26..0000000
--- a/examples/dump-tissue.scm
+++ /dev/null
@@ -1,50 +0,0 @@
-#! /usr/bin/env guile
-!#
-
-(use-modules (srfi srfi-1)
- (srfi srfi-26)
- (ice-9 match)
- (ice-9 regex)
- (dump strings)
- (dump sql)
- (dump triples)
- (dump special-forms))
-
-
-
-(define %connection-settings
- (call-with-input-file (list-ref (command-line) 1)
- read))
-
-
-
-(define-transformer dump-tissue
- ;; The Name and TissueName fields seem to be identical. BIRN_lex_ID
- ;; and BIRN_lex_Name are mostly NULL.
- (tables (Tissue))
- (schema-triples
- (gnc:tissue a skos:Concept))
- ;; Hopefully the Short_Name field is distinct and can be used as an
- ;; identifier.
- (triples (string->identifier "tissue" (field Tissue Short_Name))
- (set rdf:type 'gnc:tissue)
- (set rdfs:label (field Tissue Name))))
-
-
-
-(dump-with-documentation
- (name "Tissue Metadata")
- (connection %connection-settings)
- (table-metadata? #f)
- (prefixes
- '(("gn:" "<http://genenetwork.org/id/>")
- ("gnt:" "<http://genenetwork.org/terms/>")
- ("skos:" "<http://www.w3.org/2004/02/skos/core#>")
- ("gnc:" "<http://genenetwork.org/category/>")
- ("rdf:" "<http://www.w3.org/1999/02/22-rdf-syntax-ns#>")
- ("rdfs:" "<http://www.w3.org/2000/01/rdf-schema#>")))
- (inputs
- (list dump-tissue))
- (outputs
- '(#:documentation "./docs/dump-tissue.md"
- #:rdf "./verified-data/dump-tissue.ttl")))