From c559e13f2374f676d7c838e8bac959e45c850ae7 Mon Sep 17 00:00:00 2001
From: Shepherd on Tux02
Date: Sun, 23 Jun 2024 04:38:43 -0500
Subject: Running genecup

---
 run_genecup.sh | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/run_genecup.sh b/run_genecup.sh
index ea43a0d..8d57704 100755
--- a/run_genecup.sh
+++ b/run_genecup.sh
@@ -1,7 +1,6 @@
 #!/bin/sh
 
 export EDIRECT_PUBMED_MASTER=/export2/PubMed
-export PERL_LWP_SSL_CA_FILE=/etc/ssl/certs/ca-certificates.crt
 export TMPDIR=/export/ratspub/tmp
 export NLTK_DATA=/export2/PubMed/nltk_data
 
@@ -11,5 +10,5 @@ export NLTK_DATA=/export2/PubMed/nltk_data
 cd /home/shepherd/services/genecup
 cd $(/home/shepherd/services/genecup/guix/bin/guix build -L /home/shepherd/services/genecup/guix-past/modules -L /home/shepherd/services/genecup/guix-bioinformatics genecup-latest-with-tensorflow-native -c 4)
 
-/home/shepherd/services/genecup/guix/bin/guix shell -L /home/shepherd/services/genecup/guix-past/modules -L /home/shepherd/services/genecup/guix-bioinformatics genecup-latest-with-tensorflow-native -- ./server.py
+/home/shepherd/services/genecup/guix/bin/guix shell -C -N --expose=/etc/ssl/certs --expose=$EDIRECT_PUBMED_MASTER --share=$TMPDIR -L /home/shepherd/services/genecup/guix-past/modules -L /home/shepherd/services/genecup/guix-bioinformatics genecup-latest-with-tensorflow-native coreutils-minimal -- env TMPDIR=$TMPDIR EDIRECT_PUBMED_MASTER=$EDIRECT_PUBMED_MASTER NLTK_DATA=$NLTK_DATA ./server.py
 
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