From 864cc32f0195a1342094494f87018eb3414a4d97 Mon Sep 17 00:00:00 2001
From: Efraim Flashner
Date: Wed, 3 Nov 2021 14:10:12 +0000
Subject: genome-browser: configure guix channels

---
 genome-channels.scm   | 16 ++++++++++++++++
 run_genome_browser.sh |  3 ++-
 2 files changed, 18 insertions(+), 1 deletion(-)
 create mode 100644 genome-channels.scm

diff --git a/genome-channels.scm b/genome-channels.scm
new file mode 100644
index 0000000..5392fa8
--- /dev/null
+++ b/genome-channels.scm
@@ -0,0 +1,16 @@
+(list
+  (channel
+    (name 'gn-bioinformatics)
+    (url "http://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics")
+    (commit
+     "0ee8053e002a5b19645c6e34ea3c90d5a65596c7"))
+  (channel
+    (name 'guix)
+    (url "https://git.savannah.gnu.org/git/guix.git")
+    (commit
+     "81b31ca8e1bb4c93e8910f1d3e2e0cf3e8435286")
+    (introduction
+      (make-channel-introduction
+	"9edb3f66fd807b096b48283debdcddccfea34bad"
+	(openpgp-fingerprint
+	  "BBB0 2DDF 2CEA F6A8 0D1D  E643 A2A0 6DF2 A33A 54FA")))))
diff --git a/run_genome_browser.sh b/run_genome_browser.sh
index 68c57fb..50ddf0f 100755
--- a/run_genome_browser.sh
+++ b/run_genome_browser.sh
@@ -1,2 +1,3 @@
 #!/bin/sh
-$(/home/shepherd/guix-profiles/genome-browser/bin/guix system container -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics /home/shepherd/guix-bioinformatics/gn/services/genome-browser.scm --network --share=/export/efraimf/UCSC_Genome/gbdb=/gbdb --share=/export/efraimf/UCSC_Genome/var-lib-mysql=/var/lib/mysql --share=/export/efraimf/UCSC_Genome/var-cache-genome=/var/cache/genome --share=/export/efraimf/UCSC_Genome/var-cache-genome=/var/www/html/trash)
+/home/shepherd/guix-profiles/genome-browser/bin/guix build --no-grafts ucsc-genome-browser
+$(/home/shepherd/guix-profiles/genome-browser/bin/guix system container /home/shepherd/guix-bioinformatics/gn/services/genome-browser.scm --network --share=/export/efraimf/UCSC_Genome/gbdb=/gbdb --share=/export/efraimf/UCSC_Genome/var-lib-mysql=/var/lib/mysql --share=/export/efraimf/UCSC_Genome/var-cache-genome=/var/cache/genome --share=/export/efraimf/UCSC_Genome/var-cache-genome=/var/www/html/trash)
-- 
cgit v1.2.3