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| author | Efraim Flashner | 2021-11-02 09:45:29 +0000 |
|---|---|---|
| committer | Shepherd | 2021-11-02 09:45:29 +0000 |
| commit | db4ae18acb66d4be55cb22cb4ec1883bfdf17e0d (patch) | |
| tree | 384f773a1a01af182651355a77b076abacfb103c /run_genecup.sh | |
| parent | 1566d9cdc9902bf573cea42b3ac8558c37f2c841 (diff) | |
| download | gn-shepherd-services-db4ae18acb66d4be55cb22cb4ec1883bfdf17e0d.tar.gz | |
genecup: update service.
Diffstat (limited to 'run_genecup.sh')
| -rwxr-xr-x | run_genecup.sh | 11 |
1 files changed, 9 insertions, 2 deletions
diff --git a/run_genecup.sh b/run_genecup.sh index 12f2169..ab5d67c 100755 --- a/run_genecup.sh +++ b/run_genecup.sh @@ -1,6 +1,13 @@ #!/bin/sh -cd $(/home/shepherd/guix-profiles/genecup/bin/guix build -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics genecup-with-tensorflow-native) + export EDIRECT_PUBMED_MASTER=/export2/PubMed export PERL_LWP_SSL_CA_FILE=/etc/ssl/certs/ca-certificates.crt export TMPDIR=/export/ratspub/tmp -/home/shepherd/guix-profiles/genecup/bin/guix environment -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics --ad-hoc genecup-with-tensorflow-native -- ./server.py + +# This version for the genecup guix profile which includes guix-bioinformatics, using genecup-channels.scm. +/home/shepherd/guix-profiles/genecup/bin/guix environment --no-grafts genecup-with-tensorflow-native -- /home/shepherd/guix-profiles/genecup/bin/guix build --no-grafts genecup-with-tensorflow-native --cores=4 +cd $(/home/shepherd/guix-profiles/genecup/bin/guix build genecup-with-tensorflow-native) +/home/shepherd/guix-profiles/genecup/bin/guix environment --ad-hoc genecup-with-tensorflow-native -- ./server.py + +#cd $(/home/shepherd/guix-profiles/genecup/bin/guix build -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics genecup-with-tensorflow-native) +#/home/shepherd/guix-profiles/genecup/bin/guix environment -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics --ad-hoc genecup-with-tensorflow-native -- ./server.py |