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| author | Efraim Flashner | 2021-11-03 14:10:12 +0000 |
|---|---|---|
| committer | Shepherd | 2021-11-03 14:10:12 +0000 |
| commit | 864cc32f0195a1342094494f87018eb3414a4d97 (patch) | |
| tree | f9e12ae951f828a8967aaeafc6cf2cfb58720500 | |
| parent | fd98cc4fd97dd86d07b110574c2365ce9b87df3d (diff) | |
| download | gn-shepherd-services-864cc32f0195a1342094494f87018eb3414a4d97.tar.gz | |
genome-browser: configure guix channels
| -rw-r--r-- | genome-channels.scm | 16 | ||||
| -rwxr-xr-x | run_genome_browser.sh | 3 |
2 files changed, 18 insertions, 1 deletions
diff --git a/genome-channels.scm b/genome-channels.scm new file mode 100644 index 0000000..5392fa8 --- /dev/null +++ b/genome-channels.scm @@ -0,0 +1,16 @@ +(list + (channel + (name 'gn-bioinformatics) + (url "http://git.genenetwork.org/guix-bioinformatics/guix-bioinformatics") + (commit + "0ee8053e002a5b19645c6e34ea3c90d5a65596c7")) + (channel + (name 'guix) + (url "https://git.savannah.gnu.org/git/guix.git") + (commit + "81b31ca8e1bb4c93e8910f1d3e2e0cf3e8435286") + (introduction + (make-channel-introduction + "9edb3f66fd807b096b48283debdcddccfea34bad" + (openpgp-fingerprint + "BBB0 2DDF 2CEA F6A8 0D1D E643 A2A0 6DF2 A33A 54FA"))))) diff --git a/run_genome_browser.sh b/run_genome_browser.sh index 68c57fb..50ddf0f 100755 --- a/run_genome_browser.sh +++ b/run_genome_browser.sh @@ -1,2 +1,3 @@ #!/bin/sh -$(/home/shepherd/guix-profiles/genome-browser/bin/guix system container -L /home/shepherd/guix-past/modules -L /home/shepherd/guix-bioinformatics /home/shepherd/guix-bioinformatics/gn/services/genome-browser.scm --network --share=/export/efraimf/UCSC_Genome/gbdb=/gbdb --share=/export/efraimf/UCSC_Genome/var-lib-mysql=/var/lib/mysql --share=/export/efraimf/UCSC_Genome/var-cache-genome=/var/cache/genome --share=/export/efraimf/UCSC_Genome/var-cache-genome=/var/www/html/trash) +/home/shepherd/guix-profiles/genome-browser/bin/guix build --no-grafts ucsc-genome-browser +$(/home/shepherd/guix-profiles/genome-browser/bin/guix system container /home/shepherd/guix-bioinformatics/gn/services/genome-browser.scm --network --share=/export/efraimf/UCSC_Genome/gbdb=/gbdb --share=/export/efraimf/UCSC_Genome/var-lib-mysql=/var/lib/mysql --share=/export/efraimf/UCSC_Genome/var-cache-genome=/var/cache/genome --share=/export/efraimf/UCSC_Genome/var-cache-genome=/var/www/html/trash) |