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;;; qa-gn.scm ---
;;; Copyright © 2024 Munyoki Kilyungi <me@bonfacemunyoki.com>
;;; Copyright © 2024 Alexander Kabui <alexanderkabua@gmail.com>
;;; Copyright © 2024 John Nduli <rookie101@jnduli.co.ke>
;;;
;;; This file is part of genenetwork-machines.
;;;
;;; This program is free software; you can redistribute it and/or
;;; modify it under the terms of the GNU General Public License
;;; as published by the Free Software Foundation; either version 3
;;; of the License, or (at your option) any later version.
;;;
;;; This program is distributed in the hope that it will be useful,
;;; but WITHOUT ANY WARRANTY; without even the implied warranty of
;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;;; GNU General Public License for more details.
;;;
;;; You should have received a copy of the GNU General Public License
;;; along with this program. If not, see <http://www.gnu.org/licenses/>.
(use-modules (gnu)
((gnu packages admin) #:select (shepherd))
((gnu packages certs) #:select (nss-certs))
(gnu services databases)
(gnu build linux-container)
(genenetwork services genenetwork)
(gn services databases)
(guix packages)
(guix download)
(guix git)
(guix git-download)
(guix build-system python)
((gn packages genenetwork) #:select (genenetwork2 genenetwork3 gn-auth))
(forge acme)
(forge nginx)
(forge socket))
(operating-system
(host-name "qa-gn")
(timezone "UTC")
(locale "en_US.utf8")
(bootloader (bootloader-configuration
(bootloader grub-bootloader)
(targets (list "/dev/sdX"))))
(file-systems %base-file-systems)
(sudoers-file
(mixed-text-file "sudoers"
"@include " %sudoers-specification
"\nacme ALL = NOPASSWD: "
(file-append shepherd "/bin/herd")
" restart nginx\n"))
(packages (cons (specification->package "nss-certs") %base-packages))
(services
(cons*
(service genenetwork-service-type
(genenetwork-configuration
;; Use the latest stable version of GN2/3 with the most
;; recent LLM code.
(genenetwork2 (package
(inherit genenetwork2)
(name "genenetwork2")
(version "0")
(source
(git-checkout
(branch "feature/gnqa-system")
(url "https://github.com/genenetwork/genenetwork2.git")))))
(genenetwork3 (package
(inherit genenetwork3)
(name "genenetwork3")
(version "0")
(source
(git-checkout
(branch "feature/gnqa-api")
(url "https://github.com/genenetwork/genenetwork3.git")))))
(gn-auth (package
(inherit gn-auth)
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://git.genenetwork.org/gn-auth")
(commit "de4a7f6bfa870a0e5fc4b1f381cb452ab1250210")))
(hash
(content-hash
(base32
"0dxanpgwgjil3g0qlkar7gg8znm9dpizcwkgbyvj0h44qnv1346k")))))
(propagated-inputs
(modify-inputs (package-propagated-inputs genenetwork3)
(append nss-certs)))
(arguments
`(#:tests? #f))))
(server-name "qa.genenetwork.org")
(gn-auth-server-name "qa-auth.genenetwork.org")
;; XXX: We probably need to use the production server
;; for this
(gn2-port 10904)
(gn3-port 10905)
(gn-auth-port 10906)
(sql-uri "mysql://webqtlout:webqtlout@127.0.0.1:3307/db_webqtl")
(auth-db "/export/data/genenetwork-sqlite/auth-qa.db")
(xapian-db "/export/data/genenetwork-xapian")
(genotype-files "/export/data/genenetwork/genotype_files")
(sparql-endpoint "http://localhost:9082/sparql")
(gn3-data-directory "/export/data/genenetwork3")
(llm-db "/export/data/genenetwork-sqlite/llm-qa.db")))
(service forge-nginx-service-type
(forge-nginx-configuration
(http-listen (forge-ip-socket
(ip "0.0.0.0")
(port 10907)))
(https-listen (forge-ip-socket
(ip "0.0.0.0")
(port 10908)))))
(service acme-service-type
(acme-configuration
(email "arunisaac@systemreboot.net")))
%base-services)))
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