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#! /bin/bash -e
# genenetwork-machines --- Guix configuration for genenetwork machines
# Copyright © 2022, 2024 Arun Isaac <arunisaac@systemreboot.net>
#
# This file is part of genenetwork-machines.
#
# genenetwork-machines is free software: you can redistribute it
# and/or modify it under the terms of the GNU General Public License
# as published by the Free Software Foundation, either version 3 of
# the License, or (at your option) any later version.
#
# genenetwork-machines is distributed in the hope that it will be
# useful, but WITHOUT ANY WARRANTY; without even the implied warranty
# of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
# General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with genenetwork-machines. If not, see
# <https://www.gnu.org/licenses/>.
# See also https://issues.genenetwork.org/topics/systems/fire-up-genenetwork-system-container
echo Build and install genenetwork fallback container on $HOSTNAME
mkdir -p /export2/guix-containers/genenetwork/tmp
touch /export2/guix-containers/genenetwork/tmp/fallback-tmp
mkdir -p /export2/guix-containers/genenetwork/var/lib/acme
mkdir -p /export2/guix-containers/genenetwork/etc/genenetwork
mkdir -p /export2/data/genenetwork-xapian
mkdir -p /export2/data/genenetwork-sqlite
mkdir -p /export/data/genenetwork/genotype_files
# Note that if you change these paths you need to rebuild the container
container_script=$(~/opt/guix-gndev/bin/guix system container \
--network \
--load-path=. \
-L ~/guix-bioinformatics \
--verbosity=3 \
--share=/export2/guix-containers/genenetwork/var/lib/acme=/var/lib/acme \
--share=/export2/guix-containers/genenetwork/tmp=/var/tmp \
--share=/export2/guix-containers/genenetwork/etc/genenetwork=/etc/genenetwork \
--share=/export/data/genenetwork-xapian \
--share=/export/data/genenetwork-sqlite \
--expose=/export/data/genenetwork/genotype_files \
--share=/var/run/mysqld=/run/mysqld \
--share=/export/source/fallback-debug \
fallback.scm)
name=/usr/local/bin/fallback-system-container
if [ $? == 0 ] ; then
echo "Create $name -> $container_script"
sudo ln --force --symbolic $container_script $name
sudo ln --force --symbolic /usr/local/bin/$name /var/guix/gcroots
fi
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