From bbdd74d2def319f53e40aab3a5e1dc50e5cc2388 Mon Sep 17 00:00:00 2001
From: Arun Isaac
Date: Mon, 26 Sep 2022 13:21:25 +0530
Subject: Set up xapian search index for genenetwork2 CD.

* genenetwork-development.scm (%xapian-db-path): New variable.
(genenetwork2-shepherd-service)[start]: Share %xapian-db-path with the
container.
(%default-genenetwork2-configuration)[runner]: Pass %xapian-db-path to
CD runner.
* genenetwork/development-helper.scm (genenetwork2-runner-gexp):
Accept xapian-db-path argument and set XAPIAN_DB_PATH environment
variable.
* genenetwork-development-deploy.sh: Expose
/export/data/genenetwork/xapian in the container.
---
 genenetwork-development.scm | 10 +++++++++-
 1 file changed, 9 insertions(+), 1 deletion(-)

(limited to 'genenetwork-development.scm')

diff --git a/genenetwork-development.scm b/genenetwork-development.scm
index 2de0ff4..852711f 100644
--- a/genenetwork-development.scm
+++ b/genenetwork-development.scm
@@ -177,6 +177,10 @@ CONFIG, a <development-server-configuration> object, on startup."
 (define %genotype-files
   "/export/data/genenetwork/genotype_files")
 
+;; Path to the xapian search index used by genenetwork2
+(define %xapian-db-path
+  "/export/data/genenetwork/xapian")
+
 ;; Port on which genenetwork2 is listening
 (define %genenetwork2-port
   9092)
@@ -283,6 +287,9 @@ describing genenetwork2."
                           (file-system-mapping
                            (source #$%genotype-files)
                            (target source))
+                          (file-system-mapping
+                           (source #$%xapian-db-path)
+                           (target source))
                           (file-system-mapping
                            (source "/run/mysqld/mysqld.sock")
                            (target source)
@@ -305,7 +312,8 @@ describing genenetwork2."
                      (content (package->development-manifest genenetwork2))
                      (allow-collisions? #t))
                   #$%genenetwork3-port
-                  #$%genotype-files))))))
+                  #$%genotype-files
+                  #$%xapian-db-path))))))
 
 (define %genenetwork-accounts
   (list (user-group
-- 
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