From 8bcd9c78476c6047fb01331bdc1d0ccacdd24975 Mon Sep 17 00:00:00 2001
From: Frederick Muriuki Muriithi
Date: Wed, 20 Sep 2023 13:19:37 +0300
Subject: Pass "secrets" configurations to GN2

We need to pass in secrets to the running applications. This commit
does it for GeneNetwork2.
---
 genenetwork-development-deploy.sh | 1 +
 genenetwork-development.scm       | 1 +
 2 files changed, 2 insertions(+)

diff --git a/genenetwork-development-deploy.sh b/genenetwork-development-deploy.sh
index 673550d..0a15e1a 100755
--- a/genenetwork-development-deploy.sh
+++ b/genenetwork-development-deploy.sh
@@ -34,6 +34,7 @@ container_script=$(guix system container --network \
                         --share=/export2/guix-containers/genenetwork-development/var/lib/tissue=/var/lib/tissue \
                         --share=/export2/guix-containers/genenetwork-development/var/lib/virtuoso=/var/lib/virtuoso \
                         --share=/export2/guix-containers/genenetwork-development/var/log/cd=/var/log/cd \
+                        --expose=/export2/guix-containers/genenetwork-development/etc/genenetwork/conf=/etc/genenetwork/conf \
 			--share=/export/data/genenetwork-virtuoso=/var/lib/data \
                         --expose=/export/data/genenetwork \
                         --share=/export/data/genenetwork-xapian \
diff --git a/genenetwork-development.scm b/genenetwork-development.scm
index 056bec1..176d37c 100644
--- a/genenetwork-development.scm
+++ b/genenetwork-development.scm
@@ -205,6 +205,7 @@ executed."
             (setenv "GENENETWORK_FILES" #$genotype-files)
             (setenv "HOME" "/tmp")
             (setenv "SQL_URI" "mysql://webqtlout:webqtlout@localhost/db_webqtl")
+            (setenv "GN2_SETTINGS" "/etc/genenetwork/conf/gn2_settings.py")
             (chdir "genenetwork2")
             (apply invoke '#$test-command))))))
 
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