gn-machines - Guix configuration for genenetwork machines

Age	Commit message (Collapse)	Author
40 hours	Bind host directory to the container's /tmp directoryHEAD main	Frederick Muriuki Muriithi
	Since the /tmp directory is used for a lot of things in the code, we bind a host directory to it, so as to allow easier cleanup, and also ensure the container does not run out of disk space.
9 days	Specify path to LLM database in production.	Frederick Muriuki Muriithi
	* production.scm (operating-system)[services]{genenetwork-service-type}: Add llm-db-path. * production-deploy.sh: Share /export2/guix-containers/genenetwork/var/lib/genenetwork-gnqa with container. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
14 days	Move production to tux04.	Frederick Muriuki Muriithi
	* production-deploy.sh: Update paths for mysql, xapian and genenetwork-sqlite directories. Share path to redis state directory. * production.scm (operating-system)[services]{virtuoso-service-type}: Update server-port and http-server-port. {forge-nginx-service-type}: Update http and https ports. {redis-service-type}: New service. {genenetwork-service-type}: Update server-name, gn-auth-server-name, gn2-port, gn3-port, gn-auth-port, xapian-db, sparql-endpoint and gn3-data-directory. Add auth-db, log-level and gn3-alias-server-port. Remove genotype-files. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2024-07-12	Make the container's /var/log directory available on host	Frederick Muriuki Muriithi
	Make the container's logs available of the host to help with troubleshooting and some stickiness for the logs.
2024-03-02	Restore default auth database path on production.	Arun Isaac
	* production.scm (operating-system)[services]{genenetwork-service-type}: Remove auth-db field. * production-deploy.sh (container_script): Mount /var/genenetwork.
2024-03-01	Set ownership of secrets files.	Arun Isaac
	* genenetwork/services/genenetwork.scm (genenetwork-activation): Set ownership of secrets files. * production-deploy.sh: Mount secrets files read-write.
2024-01-09	Add "=" before --load-path argument value.	Arun Isaac
	guix requires "=" between argument names and values. * production-deploy.sh: Add "=" before --load-path argument value.
2024-01-03	Add GeneNetwork service to production container.	Arun Isaac
	* production.scm: Import (genenetwork services genenetwork), (forge acme), (forge nginx) and (forge socket). Import shepherd from (gnu packages admin). (operating-system)[sudoers-file]: Allow acme user to restart nginx. (services): Add forge-nginx, acme and genenetwork services.
2023-01-02	Register containers as garbage collector roots.	Arun Isaac
	We don't want the Guix garbage collector accidentally clearing away store items required by the container. So, register them as garbage collector roots. * genenetwork-development-deploy.sh, production-deploy.sh, public-sparql-deploy.sh, virtuoso-deploy.sh: Register containers as garbage collector roots.
2022-12-10	Move guix container state to /export2.	Arun Isaac
	We prefer /export2 to house really large data. * genenetwork-development-deploy.sh, production-deploy.sh, public-sparql-deploy.sh, virtuoso-deploy.sh: Move guix container state to /export2.
2022-08-29	Run mysql server in production.	Arun Isaac
	* production.scm: Import (gnu services databases). (operating-system)[services]: Add mysql-service-type. * production-deploy.sh: Share mysql directory with container.
2022-08-29	Run production in separate network namespace.	Arun Isaac
	The production container need interact with the outside world only through a single Unix socket file on which the GeneNetwork web server listens. Hide all other interfaces to it. * production-deploy.sh (container_script): Remove --network flag.
2022-08-25	Add production container.	Arun Isaac
	* production-deploy.sh, production.scm: New files.