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2022-10-28Expose xapian index to genenetwork3 instead of genenetwork2.Arun Isaac
* genenetwork-development.scm (genenetwork2-shepherd-service): Do not expose xapian index. (genenetwork3-shepherd-service): Expose xapian index. * genenetwork/development-helper.scm (genenetwork2-runner-gexp): Do not accept xapian index argument. (genenetwork3-runner-gexp): Accept config file argument.
2022-10-06Enable rust backtrace in genenetwork2 CD.Frederick Muriuki Muriithi
* genenetwork/development-helper.scm (genenetwork2-runner-gexp): Set RUST_BACKTRACE environment variable. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2022-09-29Run genenetwork2 CD on gunicorn.Arun Isaac
* genenetwork/development-helper.scm (genenetwork2-runner-gexp): Run genenetwork2 CD on gunicorn.
2022-09-26Set up xapian search index for genenetwork2 CD.Arun Isaac
* genenetwork-development.scm (%xapian-db-path): New variable. (genenetwork2-shepherd-service)[start]: Share %xapian-db-path with the container. (%default-genenetwork2-configuration)[runner]: Pass %xapian-db-path to CD runner. * genenetwork/development-helper.scm (genenetwork2-runner-gexp): Accept xapian-db-path argument and set XAPIAN_DB_PATH environment variable. * genenetwork-development-deploy.sh: Expose /export/data/genenetwork/xapian in the container.
2022-09-08Set genenetwork3 API endpoint used by genenetwork2 to /api3.Arun Isaac
* genenetwork/development-helper.scm (genenetwork2-runner-gexp): Set GN_SERVER_URL to /api3.
2022-08-16Add trailing slash to GN_PROXY_URL.Frederick Muriuki Muriithi
The urljoin function reduces a URL without a trailing slash to just the base, e.g. "http://genenetwork.org/gn3-proxy" is reduced to "http://genenetwork.org", which is not what we want. * genenetwork/development-helper.scm (genenetwork2-runner-gexp): Add trailing slash to GN_PROXY_URL environment variable. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2022-07-08Set GN_SERVER_URL when running genenetwork2.Arun Isaac
* genenetwork/development-helper.scm (genenetwork2-runner-gexp): Set GN_SERVER_URL.
2022-07-06Switch to tissue service from guix-forge.Arun Isaac
* genenetwork-development-deploy.sh: Share tissue state directory with container. * genenetwork-development.scm: Do not import tissue from (gn packages gemini). Import (forge tissue). (<tissue-configuration>, <tissue-host>): Delete types. (%tissue-accounts, tissue-service-type): Delete variables. (gn-gemtext-threads-website, gn-gemtext-threads-index, tissue-conf-gexp, tissue-shepherd-service): Delete functions. (gn-gemtext-threads-project)[ci-jobs]: Use tissue pull in gn-gemtext-threads job. (tissue-reverse-proxy-server-block): Use default tissue state directory and unix socket paths. Do not accept them as arguments. (operating-system)[services]: Use new tissue-service-type parameters. Update invocation of tissue-reverse-proxy-server-block. * genenetwork/development-helper.scm (tissue-website-gexp, tissue-index-gexp): Delete functions.
2022-06-29Build tissue static website in temporary writable directory.Arun Isaac
tissue now builds a xapian index and this requires a writable directory. * genenetwork/development-helper.scm (tissue-website-gexp): Build static website in temporary writable directory.
2022-06-29Add tissue search interface.Arun Isaac
* genenetwork-development.scm: Import shadow from (gnu packages admin). (gn-gemtext-threads-index): New function. (gn-gemtext-threads-project)[ci-jobs]: Add gn-gemtext-threads-index. (<tissue-configuration>): New type. (tissue-shepherd-service, tissue-reverse-proxy-server-block): New function. (%tissue-accounts, tissue-service-type): New variables. (operating-system)[services]: Add tissue tissue service and reverse proxy it. * genenetwork/development-helper.scm (tissue-index-gexp): New function.
2022-06-29Remove tissue's dependence on the git CLI tool.Arun Isaac
tissue now uses libgit2 through guile-git and does not use the git CLI tool. * genenetwork-development.scm (gn-gemtext-threads-website): Remove git-minimal from manifest. * genenetwork/development-helper.scm (tissue-website-gexp): Remove reassurance to git.
2022-06-14Reassure git that the gn-gemtext-threads source directory is safe.Arun Isaac
* genenetwork/development-helper.scm (tissue-website-gexp): Reassure git that the gn-gemtext-threads source directory is safe. * genenetwork-development.scm (gn-gemtext-threads-website): Add git-minimal to manifest.
2022-04-15Initial commitArun Isaac