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2024-04-12Set up log level in gunicornadd-gunicorn-loggingFrederick Muriuki Muriithi
2024-04-10gn-uploader: Enable changing of log-level for container.Frederick Muriuki Muriithi
This commit enables us to change the logging level of the gn-uploader service within the container: this will help in the instances when we need to debug events in the application that are unexpected.
2024-04-09gn-uploader: Change ownership of data-directoryFrederick Muriuki Muriithi
While the share is technically writable from the container, the service was running as an unprivileged user, and thus could not write to the data-directory. This commit changes the ownership of the data-directory to the same user that runs the service.
2024-04-09gn-uploader: Made datadir writable and set up uploads directory.Frederick Muriuki Muriithi
2024-04-05Document configuration settingsPjotr Prins
2024-04-03Set up SQL_URI for gn-auth.Frederick Muriuki Muriithi
2024-04-03gendev: special machine for PjotrPjotr Prins
2024-04-01Share TMPDIR between GN2 and GN3Pjotr Prins
2024-04-01fallback: have gn2 and gn3 share a source directory so we can update/debug ↵Pjotr Prins
source code for development. See topics/systems/debug-and-developing-code-with-genenetwork-system-container.gmi
2024-03-28gn-uploader: Increment maximum size of uploadable files.Frederick Muriuki Muriithi
2024-03-25Add gn-uploader service.Frederick Muriuki Muriithi
* genenetwork/services/genenetwork.scm (<gn-uploader-configuration>): New type. (gn-uploader-activation, gn-uploader-gunicorn-app, gn-uploader-nginx-server-block): New functions. (gn-uploader-service-type): New variable. * uploader.scm, uploader-deploy.sh: New files. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2024-03-21Add timeout for proxiesPjotr Prins
2024-03-05Let the gunicorn-gn-auth user own the auth database.Arun Isaac
gn-auth runs as the gunicorn-gn-auth user, not the genenetwork user. * genenetwork/services/genenetwork.scm (genenetwork-activation): Let the gunicorn-gn-auth user own the auth database. Reported-by: Frederick M. Muriithi <fredmanglis@protonmail.com>
2024-03-05Pass on the request scheme to GN2 appFrederick Muriuki Muriithi
This is useful to enable building URIs with the correct scheme in the application. These URIs are important when redirection to and from external services such as the gn-auth service.
2024-03-01Set AUTH_SERVER_URL on production genenetwork2.Arun Isaac
* genenetwork/services/genenetwork.scm (genenetwork-gunicorn-apps): Set AUTH_SERVER_URL on production genenetwork2.
2024-03-01Reverse proxy gn-auth on production.Arun Isaac
* genenetwork/services/genenetwork.scm (<genenetwork-configuration>)[gn-auth-server-name]: New field. * genenetwork/services/genenetwork.scm (genenetwork-nginx-server-block): Rename to ... (genenetwork-nginx-server-blocks): ... this. Return list of reverse proxy blocks including one for gn-auth. * genenetwork/services/genenetwork.scm (genenetwork-service-type): Use genenetwork-nginx-server-blocks instead of genenetwork-nginx-server-block. * production.scm (operating-system)[services]{genenetwork-service-type}: Add gn-auth-server-name.
2024-03-01Set owner-only permissions on secrets files.Arun Isaac
* genenetwork/services/genenetwork.scm (genenetwork-activation): Set owner-only permissions on secrets files.
2024-03-01Set ownership of secrets files.Arun Isaac
* genenetwork/services/genenetwork.scm (genenetwork-activation): Set ownership of secrets files. * production-deploy.sh: Mount secrets files read-write.
2024-03-01Add gn-auth to production genenetwork service.Arun Isaac
* genenetwork/services/genenetwork.scm: Import gn-auth from (gn packages genenetwork). * genenetwork/services/genenetwork.scm (<genenetwork-configuration>)[gn-auth, gn-auth-port, gn-auth-secrets]: New fields. * genenetwork/services/genenetwork.scm (genenetwork-gunicorn-apps): Add gn-auth gunicorn app.
2024-01-09genenetwork: Increase gunicorn timeout for genenetwork3.Arun Isaac
* genenetwork/services/genenetwork.scm (genenetwork-gunicorn-apps): Increase gunicorn timeout for genenetwork3 to 1200 seconds.
2024-01-08Increase gunicorn timeout for genenetwork3.Arun Isaac
* genenetwork-development.scm (genenetwork3-cd-gexp): Increase gunicorn timeout to 1200 seconds. * genenetwork/services/genenetwork.scm (genenetwork-gunicorn-apps): Add TODO note to increase gunicorn timeout to 1200 seconds.
2024-01-03Add GeneNetwork service.Arun Isaac
* genenetwork/services/genenetwork.scm: New file.