gn-machines - Guix configuration for genenetwork machines

Age	Commit message (Collapse)	Author
2022-06-14	Reassure git that the gn-gemtext-threads source directory is safe.	Arun Isaac
	* genenetwork/development-helper.scm (tissue-website-gexp): Reassure git that the gn-gemtext-threads source directory is safe. * genenetwork-development.scm (gn-gemtext-threads-website): Add git-minimal to manifest.
2022-06-10	Link to channels.scm from laminar page.	Arun Isaac
	* genenetwork-development.scm (laminar-template-gexp): Link to channels.scm.
2022-06-10	Publish channels.scm for laminar.	Arun Isaac
	* genenetwork-development.scm: Import (gnu services web) and (guix channels). (channels-scm-gexp, laminar-reverse-proxy-server-block): New functions. (operating-system)[services]: Bind laminar service to 9089. Add nginx service on 9090 to reverse proxy laminar.
2022-06-10	Relabel issue tracker link as "Issues".	Arun Isaac
	* genenetwork-development.scm (laminar-template-gexp): Relabel issue tracker link as "Issues".
2022-06-09	Link to issue tracker from Laminar page.	Arun Isaac
	* genenetwork-development.scm: Import tar from (gnu packages base) and gzip from (gnu packages compression). (laminar-template-gexp, install-laminar-template-gexp): New functions. (operating-system)[services]: Add install-laminar-template service.
2022-06-09	Brand Laminar page with a title of "GeneNetwork CI".	Arun Isaac
	* genenetwork-development.scm (operating-system)[services]: Set title of Laminar page to "GeneNetwork CI".
2022-06-09	Remove unnecessary root file system configuration.	Arun Isaac
	* genenetwork-development.scm (operating-system)[file-systems]: Remove unnecessary root file system configuration.
2022-05-05	Remove graphviz from dump-genenetwork-database-test manifest.	Arun Isaac
	* genenetwork-development.scm (dump-genenetwork-database-tests): Remove graphviz from manifest.
2022-05-05	Build dump-genenetwork-database before dumping database.	Arun Isaac
	* genenetwork-development.scm (dump-genenetwork-database): Add gnu-make to manifest. Build scheme source files before dumping database.
2022-05-04	Load dumped RDF into virtuoso and visualize schema.	Arun Isaac
	* genenetwork-development.scm: Import virtuoso-ose from (gnu packages databases). Import guile-hashing from (gnu packages guile-xyz). (dump-genenetwork-database): Add ccwl, guile-hashing, guile-libyaml, guile-sparql and virtuoso-ose to manifest. Load dumped RDF into virtuoso and visualize schema.
2022-05-04	Validate dumped RDF using rapper.	Arun Isaac
	* genenetwork-development.scm: Import raptor2 from (gnu packages rdf). (dump-genenetwork-database): Validate dumped RDF using rapper.
2022-04-20	Add dump-genenetwork-database CI job.	Arun Isaac
	* genenetwork-development.scm (%dump-genenetwork-database-export-directory): New variable. (dump-genenetwork-database): New function. (dump-genenetwork-database-project)[ci-jobs]: Rename dump-genenetwork-database job to dump-genenetwork-database-tests. Add new dump-genenetwork-database job. (operating-system): Add set-dump-genenetwork-database-export-directory-permissions service.
2022-04-15	Initial commit	Arun Isaac