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Guix configuration for genenetwork machines
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genenetwork-development.scm
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Author
2023-10-28
Do not use upstream Guix in CI jobs.
Arun Isaac
2023-10-05
Fix guix-bioinformatics path in project definition.
Arun Isaac
2023-10-05
Fix typo in comment about cloning the latest gn-auth repository.
Arun Isaac
2023-10-05
Construct yoyo.ini using guile-ini.
Arun Isaac
2023-10-04
Use guix-bioinformatics repository on tux02.
Arun Isaac
2023-10-04
Import gn-auth from (gn packages genenetwork).
Arun Isaac
2023-10-04
Import python-mypy from (gnu packages python).
Arun Isaac
2023-10-04
Use switch-symlinks from (guix build utils).
Arun Isaac
2023-09-28
Use upstream mypy.
Munyoki Kilyungi
2023-09-27
Revert "Set the envvar in the gexp"
Frederick Muriuki Muriithi
2023-09-27
Revert "Expose configurations directory to pola-wrapper."
Frederick Muriuki Muriithi
2023-09-27
Revert "Expose config file to pola-wrapper"
Frederick Muriuki Muriithi
2023-09-20
Expose config file to pola-wrapper
Frederick Muriuki Muriithi
2023-09-20
Expose configurations directory to pola-wrapper.
Frederick Muriuki Muriithi
2023-09-20
Set the envvar in the gexp
Frederick Muriuki Muriithi
2023-09-20
Pass "secrets" configurations to GN2
Frederick Muriuki Muriithi
2023-09-19
Use appropriate mypy for Python3.10
Frederick Muriuki Muriithi
2023-09-19
Add missing `gn-auth-repository` configuration
Frederick Muriuki Muriithi
2023-09-16
Add CI/CD definitions for gn-auth
Frederick Muriuki Muriithi
2023-09-11
sed /s/dump-genenetwork/transform-genenetwork/g.
Munyoki Kilyungi
2023-09-11
sed /s/dump-genenetwork/transform-genenetwork/g.
Munyoki Kilyungi
2023-09-11
Update the repo-url for transforming genenetwork databases.
Munyoki Kilyungi
2023-09-05
Use correct name for python-mypy
Munyoki Kilyungi
2023-09-05
Use mypy defined in guix-bioinformatics
Munyoki Kilyungi
2023-09-04
Use self-hosted git repo
Munyoki Kilyungi
2023-09-04
Use self-hosted GN repository
Munyoki Kilyungi
2023-08-10
Set up cgit service.
Arun Isaac
2023-08-10
Switch to the forge-nginx and ACME services.
Arun Isaac
2023-07-19
Use tissue from guix-forge.
Arun Isaac
2023-07-19
Disable verbose build logs for guix-bioinformatics job.
Arun Isaac
2023-07-19
Use guix-channel-job-gexp for genenetwork3 tests.
Arun Isaac
2023-07-19
Add guix-bioinformatics CI job.
Arun Isaac
2023-07-11
Revert "Disable tests"
Munyoki Kilyungi
2023-07-10
Revert "Fix genotype file path"
Munyoki Kilyungi
2023-07-10
Fix genotype file path
Munyoki Kilyungi
2023-07-10
Disable tests
Munyoki Kilyungi
2023-06-26
Add virtuoso allowed dirs
Munyoki Kilyungi
2023-06-15
Increase threshold for number-of-buffers and maximum-dirty-buffers.
Munyoki Kilyungi
2023-06-08
Share auth-db-path with genenetwork3-pola-wrapper.
Frederick Muriuki Muriithi
2023-06-06
Set AUTH_DB, not AUTH_DB_PATH.
Frederick Muriuki Muriithi
2023-05-31
Do not create xapian build directory.
Arun Isaac
2023-05-31
Use an absolute GN_SERVER_URL.
Frederick Muriuki Muriithi
2023-05-31
Add trailing slash to GN_SERVER_URL.
Frederick Muriuki Muriithi
2023-05-05
Run migrations after tests and before restarting genenetwork3.
Frederick Muriuki Muriithi
2023-04-12
Run tissue on an IP socket.
Arun Isaac
2023-04-12
Disable libgit2 repository ownership validation.
Arun Isaac
2023-04-11
Use tissue package from Guix upstream.
Arun Isaac
2023-04-11
Provide MySQL URI to the xapian indexing script.
Frederick Muriuki Muriithi
2023-02-09
Share the mysqld socket directory into the container.
Arun Isaac
2023-01-18
Add data directory to genenetwork configuration.
Arun Isaac
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