| Age | Commit message (Expand) | Author |
|---|
| 2023-11-13 | Allow http transport for proxied app...The application is behind a proxy and is running as http, therefore,
to allow the redirects within the application and responses to work,
we need to enable the http transport for the application.
| Frederick Muriuki Muriithi |
| 2023-11-13 | GN Secrets: Set up secrets files for GN2 and GN3 | Frederick Muriuki Muriithi |
| 2023-11-10 | auth: define setting for CI/CD auth. | Frederick Muriuki Muriithi |
| 2023-11-10 | Add documentation on connecting to container. | Frederick Muriuki Muriithi |
| 2023-11-10 | Update domain for CD auth service. | Frederick Muriuki Muriithi |
| 2023-11-02 | Secrets: Add instance folder to pola-wrapper. | Frederick Muriuki Muriithi |
| 2023-11-02 | SECRETS: Fix secrets path. | Frederick Muriuki Muriithi |
| 2023-11-02 | Secrets: Setup gn-auth instance path to find the secrets. | Frederick Muriuki Muriithi |
| 2023-11-02 | gn-auth: restart GN2 also after any changes to gn-auth. | Frederick Muriuki Muriithi |
| 2023-11-02 | gn-auth: Remove automated migrations. | Frederick Muriuki Muriithi |
| 2023-10-28 | Do not use upstream Guix in CI jobs....* genenetwork-development.scm (genenetwork-projects): Remove default
upstream Guix channels.
| Arun Isaac |
| 2023-10-05 | Fix guix-bioinformatics path in project definition....*
genenetwork-development.scm (guix-bioinformatics-project)[repository]:
Fix path.
| Arun Isaac |
| 2023-10-05 | Fix typo in comment about cloning the latest gn-auth repository....* genenetwork-development.scm (gn-auth-migrations-laminar): Fix typo
in comment.
| Arun Isaac |
| 2023-10-05 | Construct yoyo.ini using guile-ini....Constructing INI files from S-expressions instead of using string
substitutions is a little nicer.
* genenetwork-development.scm (gn-auth-migrations-yoyo-ini-gexp): New
function.
(gn-auth-migrations): Use gn-auth-migrations-yoyo-ini-gexp.
| Arun Isaac |
| 2023-10-05 | Mount git repositories read-write....* genenetwork-development-deploy.sh: Mount /home/git/public read-write
into the container.
| Arun Isaac |
| 2023-10-04 | Use guix-bioinformatics repository on tux02....The guix-bioinformatics repository is now on tux02. There is no
webhook to listen for. So, use it directly as a local repository.
*
genenetwork-development.scm (guix-bioinformatics-project)[repository]:
Use local repository on tux02.
| Arun Isaac |
| 2023-10-04 | Import gn-auth from (gn packages genenetwork)....* genenetwork-development.scm: Import gn-auth from (gn packages
genenetwork) instead of from (gn-auth) or elsewhere.
| Arun Isaac |
| 2023-10-04 | Import python-mypy from (gnu packages python)....* genenetwork-development.scm: Import python-mypy from (gnu packages
python) instead of (gn packages python).
| Arun Isaac |
| 2023-10-04 | Use switch-symlinks from (guix build utils)....switch-symlinks was recently moved from (guix utils) to (guix build
utils). It can now be safely used in build-side code.
* genenetwork-development.scm (install-laminar-template-gexp): Use
switch-symlinks from (guix build utils).
| Arun Isaac |
| 2023-09-28 | Use upstream mypy....* genenetwork-development.scm: Replace python-mypy-0.981 import with
upstream version.
(genenetwork3-mypy, genenetwork-projects): Replace python-mypy-0.981
with upstream version.
Acked-by: Arun Isaac <arunisaac@systemreboot.net>
| Munyoki Kilyungi |
| 2023-09-27 | Revert "Set the envvar in the gexp"...This reverts commit 416bf833737b23e86756b68e0cb162529bbd2665.
| Frederick Muriuki Muriithi |
| 2023-09-27 | Revert "Expose configurations directory to pola-wrapper."...This reverts commit 5ec4b45702cba430b8da47949f37317527cf05a6.
| Frederick Muriuki Muriithi |
| 2023-09-27 | Revert "Expose config file to pola-wrapper"...This reverts commit d12e7e45883df361ab4f78055c8112ded2e896ca.
| Frederick Muriuki Muriithi |
| 2023-09-20 | Expose config file to pola-wrapper | Frederick Muriuki Muriithi |
| 2023-09-20 | Expose configurations directory to pola-wrapper. | Frederick Muriuki Muriithi |
| 2023-09-20 | Set the envvar in the gexp | Frederick Muriuki Muriithi |
| 2023-09-20 | Pass "secrets" configurations to GN2...We need to pass in secrets to the running applications. This commit
does it for GeneNetwork2.
| Frederick Muriuki Muriithi |
| 2023-09-19 | Use appropriate mypy for Python3.10 | Frederick Muriuki Muriithi |
| 2023-09-19 | Add missing `gn-auth-repository` configuration | Frederick Muriuki Muriithi |
| 2023-09-16 | Add CI/CD definitions for gn-auth | Frederick Muriuki Muriithi |
| 2023-09-11 | sed /s/dump-genenetwork/transform-genenetwork/g....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-11 | sed /s/dump-genenetwork/transform-genenetwork/g....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-11 | Update the repo-url for transforming genenetwork databases....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-05 | Use correct name for python-mypy...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-05 | Update arguments to pylint...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-05 | Use mypy defined in guix-bioinformatics...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-09-04 | Use self-hosted git repo | Munyoki Kilyungi |
| 2023-09-04 | Use self-hosted GN repository...Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| Munyoki Kilyungi |
| 2023-08-12 | Add link to git repo | Pjotr Prins |
| 2023-08-10 | Set up cgit service....* genenetwork-development.scm: Import (forge cgit).
(operating-system)[services]: Add cgit service.
* genenetwork-development-deploy.sh: Expose cgit repository directory.
| Arun Isaac |
| 2023-08-10 | Switch to the forge-nginx and ACME services....* genenetwork-development.scm: Import only nginx-server-configuration
and nginx-location-configuration from (gnu services
web). Import (forge acme) and (forge nginx).
(development-server-reverse-proxy-server-block,
laminar-reverse-proxy-server-block,
tissue-reverse-proxy-server-block): Remove listen argument.
(operating-system)[sudoers-file]: Permit the acme user to restart
nginx.
[services]: Replace nginx service with a forge-nginx service. Add ACME
service.
* genenetwork-development-deploy.sh: Share /var/lib/acme.
| Arun Isaac |
| 2023-08-10 | Add nginx package with the ssl_preread module....* nginx-preread.scm, nginx-preread-deploy.sh: New files.
| Arun Isaac |
| 2023-07-27 | README: Remove references to penguin2....penguin2 is no more. We now use tux02 for development.
* README.org: Change references to penguin2 to tux02.
| Arun Isaac |
| 2023-07-27 | Revert "README: host names"...This reverts commit fc65c2a2c056ee9f313631da6e5f93adec277dd5.
| Arun Isaac |
| 2023-07-19 | Use tissue from guix-forge....The libgit2 patch is now in guix-forge. So, we don't have to repeat it
here.
* genenetwork-development.scm (libgit2-1.3, guile-git-for-tissue,
tissue): Delete variables.
(operating-system)[services]: Do not specify package for tissue
service.
| Arun Isaac |
| 2023-07-19 | Disable verbose build logs for guix-bioinformatics job....* genenetwork-development.scm (guix-bioinformatics-project): Disable
verbose build logs.
| Arun Isaac |
| 2023-07-19 | Use guix-channel-job-gexp for genenetwork3 tests....* genenetwork-development.scm (genenetwork-projects): Use
guix-channel-job-gexp for genenetwork3 tests.
| Arun Isaac |
| 2023-07-19 | Add guix-bioinformatics CI job....* genenetwork-development.scm (guix-channel-job-gexp): New function.
(guix-bioinformatics-project): New variable.
(operating-system)[services]: Add guix-bioinformatics-project to
forge-service-type.
| Arun Isaac |
| 2023-07-11 | README: host names | Pjotr Prins |
| 2023-07-11 | Revert "Disable tests"...This reverts commit 37fa3c11908d7aada419be296ebef67415de3bc9.
| Munyoki Kilyungi |
