| Age | Commit message (Expand) | Author |
|---|---|---|
| 2024-05-14 | services: genenetwork: Set ssl-path to 777. | Munyoki Kilyungi |
| 2024-05-14 | services: genenetwork: Set llm-db owner to gunicorn-genenetwork3. | Munyoki Kilyungi |
| 2024-05-14 | services: genenetwork: Add ssl-path to genenetwork-configuration. | Munyoki Kilyungi |
| 2024-05-14 | Add guix configuration for the LLM instance....* qa-gn-deploy.sh: New file. * qa-gn.scm: New file. Co-authored-by: Alexander_Kabui <alexanderkabua@gmail.com> Co-authored-by: John Nduli <rookie101@jnduli.co.ke> | Munyoki Kilyungi |
| 2024-05-14 | services: genenetwork: Make llm-db file writeable....Co-authored-by: Alexander_Kabui <alexanderkabua@gmail.com> | Munyoki Kilyungi |
| 2024-05-06 | services: genenetwork: Add llm-db path to genenetwork-configuration....Co-authored-by: Alexander_Kabui <alexanderkabua@gmail.com> | Munyoki Kilyungi |
| 2024-05-02 | Mount llm-db-path into genenetwork3 container....* genenetwork-development.scm (genenetwork-shepherd-services): Mount llm-db-path into genenetwork3 container. | Arun Isaac |
| 2024-04-28 | Add llm-db-path for CD....genenetwork-development.scm (<genenetwork-configuration>)[llm-db-path]: New field. (genenetwork3-cd-gexp): Configure LLM_DB_PATH in gn3.conf. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> | Alexander_Kabui |
| 2024-04-26 | gn-auth: Use new entry-point script. | Frederick Muriuki Muriithi |
| 2024-04-26 | Set up SSL keys for CI/CD for gn2 and gn-auth | Frederick Muriuki Muriithi |
| 2024-04-26 | gn-auth: Update repository URL | Frederick Muriuki Muriithi |
| 2024-04-12 | gn-uploader: use installed entry-point. | Frederick Muriuki Muriithi |
| 2024-04-12 | gn-uploader: use defined app in wsgi.py to pick up logging configs. | Frederick Muriuki Muriithi |
| 2024-04-12 | Set up log level in gunicornadd-gunicorn-logging | Frederick Muriuki Muriithi |
| 2024-04-10 | gn-uploader: Enable changing of log-level for container....This commit enables us to change the logging level of the gn-uploader service within the container: this will help in the instances when we need to debug events in the application that are unexpected. | Frederick Muriuki Muriithi |
| 2024-04-09 | gn-uploader: Change ownership of data-directory...While the share is technically writable from the container, the service was running as an unprivileged user, and thus could not write to the data-directory. This commit changes the ownership of the data-directory to the same user that runs the service. | Frederick Muriuki Muriithi |
| 2024-04-09 | gn-uploader: share datadir in read-write mode | Frederick Muriuki Muriithi |
| 2024-04-09 | gn-uploader: Made datadir writable and set up uploads directory. | Frederick Muriuki Muriithi |
| 2024-04-05 | Document configuration settings | Pjotr Prins |
| 2024-04-05 | README: minor edits | Pjotr Prins |
| 2024-04-04 | fallback: for now use special guix build | Pjotr Prins |
| 2024-04-04 | Remove tmp before creating it | Pjotr Prins |
| 2024-04-03 | Set up SQL_URI for gn-auth. | Frederick Muriuki Muriithi |
| 2024-04-03 | Use gn-uploader from gn-uploader channel...This commit lets us use the bleeding-edge gn-uploader from the gn-uploader channel. | Frederick Muriuki Muriithi |
| 2024-04-03 | Use default genenetwork2...The uploader container is for testing that the gn-uploader package builds and the application is working correctly. It sets up a service that allows users to upload data. It does need the other GeneNetwork services, but does not need the latest and greatest. This commit uses the default genenetwork2 package (which will mostly be stable): thus there are fewer (if any) issues getting the other services to run. | Frederick Muriuki Muriithi |
| 2024-04-03 | gendev: special machine for Pjotr | Pjotr Prins |
| 2024-04-02 | fallback: reinstate genenetwork3-stable | Pjotr Prins |
| 2024-04-01 | Share TMPDIR between GN2 and GN3 | Pjotr Prins |
| 2024-04-01 | fallback: have gn2 and gn3 share a source directory so we can update/debug so......topics/systems/debug-and-developing-code-with-genenetwork-system-container.gmi | Pjotr Prins |
| 2024-03-28 | gn-uploader: Increment maximum size of uploadable files. | Frederick Muriuki Muriithi |
| 2024-03-25 | Add gn-uploader service....* genenetwork/services/genenetwork.scm (<gn-uploader-configuration>): New type. (gn-uploader-activation, gn-uploader-gunicorn-app, gn-uploader-nginx-server-block): New functions. (gn-uploader-service-type): New variable. * uploader.scm, uploader-deploy.sh: New files. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net> | Frederick Muriuki Muriithi |
| 2024-03-21 | Add timeout for proxies | Pjotr Prins |
| 2024-03-14 | fallback: using genenetwork2-stable package | Pjotr Prins |
| 2024-03-14 | fallback: allow building xapian index inside container | Pjotr Prins |
| 2024-03-11 | Infer profile from guix executable used to build container....Not everyone has GUIX_PROFILE set in their environment. Inferring the profile from the guix executable is more reliable. * genenetwork-development.scm (channels-scm-gexp): Infer profile from guix executable used to build container. | Arun Isaac |
| 2024-03-06 | Move CI/CD configurations from ENVVARS into a file. | Frederick Muriuki Muriithi |
| 2024-03-05 | Let the gunicorn-gn-auth user own the auth database....gn-auth runs as the gunicorn-gn-auth user, not the genenetwork user. * genenetwork/services/genenetwork.scm (genenetwork-activation): Let the gunicorn-gn-auth user own the auth database. Reported-by: Frederick M. Muriithi <fredmanglis@protonmail.com> | Arun Isaac |
| 2024-03-05 | Pass on the request scheme to GN2 app...This is useful to enable building URIs with the correct scheme in the application. These URIs are important when redirection to and from external services such as the gn-auth service. | Frederick Muriuki Muriithi |
| 2024-03-04 | Fallback runs base services on host | Pjotr Prins |
| 2024-03-02 | Restore default auth database path on production....* production.scm (operating-system)[services]{genenetwork-service-type}: Remove auth-db field. * production-deploy.sh (container_script): Mount /var/genenetwork. | Arun Isaac |
| 2024-03-02 | docs: Update process of finding out container PID. | Frederick Muriuki Muriithi |
| 2024-03-01 | Add GeneNetwork service for fallback at spice....* fallback.scm: New file. | Pjotr Prins |
| 2024-03-01 | Set AUTH_SERVER_URL on production genenetwork2....* genenetwork/services/genenetwork.scm (genenetwork-gunicorn-apps): Set AUTH_SERVER_URL on production genenetwork2. | Arun Isaac |
| 2024-03-01 | Reverse proxy gn-auth on production....* genenetwork/services/genenetwork.scm (<genenetwork-configuration>)[gn-auth-server-name]: New field. * genenetwork/services/genenetwork.scm (genenetwork-nginx-server-block): Rename to ... (genenetwork-nginx-server-blocks): ... this. Return list of reverse proxy blocks including one for gn-auth. * genenetwork/services/genenetwork.scm (genenetwork-service-type): Use genenetwork-nginx-server-blocks instead of genenetwork-nginx-server-block. * production.scm (operating-system)[services]{genenetwork-service-type}: Add gn-auth-server-name. | Arun Isaac |
| 2024-03-01 | Set owner-only permissions on secrets files....* genenetwork/services/genenetwork.scm (genenetwork-activation): Set owner-only permissions on secrets files. | Arun Isaac |
| 2024-03-01 | Set ownership of secrets files....* genenetwork/services/genenetwork.scm (genenetwork-activation): Set ownership of secrets files. * production-deploy.sh: Mount secrets files read-write. | Arun Isaac |
| 2024-03-01 | Add gn-auth to production genenetwork service....* genenetwork/services/genenetwork.scm: Import gn-auth from (gn packages genenetwork). * genenetwork/services/genenetwork.scm (<genenetwork-configuration>)[gn-auth, gn-auth-port, gn-auth-secrets]: New fields. * genenetwork/services/genenetwork.scm (genenetwork-gunicorn-apps): Add gn-auth gunicorn app. | Arun Isaac |
| 2024-02-29 | Bump copyright year for Fred....* genenetwork-development.scm: Bump copyright year for Fred. | Arun Isaac |
| 2024-02-29 | Do not hard-code GN_AUTH_SECRETS....* genenetwork-development.scm (<genenetwork-configuration>)[gn-auth-secrets]: New field. * genenetwork-development.scm (gn-auth-cd-gexp): Set GN_AUTH_SECRTS from gn-auth-secrets of <genenetwork-configuration> object. (operating-system)[services]{genenetwork-service-type}: Set gn-auth-secrets. | Arun Isaac |
| 2024-02-28 | Set up correct secrets file for gn-auth | Frederick Muriuki Muriithi |
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index : gn-machines | |
| Guix configuration for genenetwork machines |
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