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2025-05-01Add default boiler plate for setting up conf files relevant for gn2.Munyoki Kilyungi
2025-04-24Set GN3_SECRETS as an environment variable.Munyoki Kilyungi
2025-04-24Ensure the path for "auth-db-path" is writable.Munyoki Kilyungi
2025-04-24Add "TEST_FEATURE_SWITCH=True" flag for local development.Munyoki Kilyungi
2025-04-24Remove /api/ from GN3_LOCAL_URL environment variable.Munyoki Kilyungi
2025-04-22Set correct file and dir permissions for gn conf files.Munyoki Kilyungi
2025-04-22Set SQL_URI for genenetwork3-gexp.Munyoki Kilyungi
2025-04-22Make "/etc/genenetwork/conf" writable by gn2, gn3 and gn-auth.Munyoki Kilyungi
2025-04-22Use match-record for defaults instead of hard-coded values.Munyoki Kilyungi
2025-04-22Set "gn-auth-secrets" to a secrets files instead of a directory.Munyoki Kilyungi
2025-04-22Rewrite container setup script for local development.Munyoki Kilyungi
2025-04-22Fix virtuoso's `dirs-allowed` to use a list instead of a string.Munyoki Kilyungi
2025-04-22Ensure proper ownership of gn-auth secrets directory and files.Munyoki Kilyungi (aider)
2025-04-22Update secret file paths and handling in genenetwork container conf.Munyoki Kilyungi
2025-04-08Add new system container for local dev work.Munyoki Kilyungi
2025-04-03ACME: Allow acme service to restart nginx with no sudo passwordFrederick Muriuki Muriithi
2025-04-03public-sparql: use the /export2 disk.Frederick Muriuki Muriithi
2025-04-03public-sparql: Separate instance dir from data directoriesFrederick Muriuki Muriithi
2025-03-28Update tissue configuration in line with guix-forge update.Arun Isaac
2025-03-28Make dirs-allowed a list of directories.Arun Isaac
2025-03-21uploader-container: Define directory to store sessions in.Frederick Muriuki Muriithi
2025-03-21uploader-container: /export2 is full, move files to /exportFrederick Muriuki Muriithi
2025-03-21uploader-container: Abstract away paths in the container.Frederick Muriuki Muriithi
2025-03-21uploader-container: Bind missing directories to the container.Frederick Muriuki Muriithi
2025-03-21uploader-container: Remove unnecessary `virtuoso-service-type`Frederick Muriuki Muriithi
2025-03-20GN2: Allow form size up to 50MB in size.Frederick Muriuki Muriithi
2025-03-07GN2: Provide directory to store sessions in.Frederick Muriuki Muriithi
2025-03-07Change paths for use with tux02.Frederick Muriuki Muriithi
2025-02-24gn-guile: Set up correct ownership for gn-docs.Frederick Muriuki Muriithi
2025-02-24Provide bare checkout of 'gn-docs' for production 'gn-guile'.Frederick Muriuki Muriithi
2025-02-24public-sparql: Fix configuration — Expects list, use list.Frederick Muriuki Muriithi
2025-02-24Use enterprise disk for container data storage.Frederick Muriuki Muriithi
2025-02-24gn-auth: Remove obsolete configuration variables.Frederick Muriuki Muriithi
2025-02-21Split the tempdirs for various applications.Frederick Muriuki Muriithi
2025-02-20Remove 'mysql-service-type' service from 'production' container.Frederick Muriuki Muriithi
2025-02-20Don't allow GN3 user write permissions to 'TMPDIR'.Frederick Muriuki Muriithi
2025-02-20Assign ownership of 'TMPDIR' and its contents to GN2 user.Frederick Muriuki Muriithi
2025-02-19Don't share MariaDB data directory with the production container.Frederick Muriuki Muriithi
2025-02-17Grant ownership of genotype-files to GN2 user.Frederick Muriuki Muriithi
2025-02-11Bind the chosen host directory to genenetwork's TMPDIR path.Frederick Muriuki Muriithi
2025-02-11Add `gn-tmpdir` configuration setting to <genenetwork-configuration>Frederick Muriuki Muriithi
2025-02-11Remove comments: The comments were causing a build invocation error.Frederick Muriuki Muriithi
2025-02-11Update `dirs-allowed` for gn2-container virtuoso.Frederick Muriuki Muriithi
2025-02-03Pass ttl directory in list of allowed directories for virtuoso.Frederick Muriuki Muriithi
2025-02-03Pass virtuoso's ttl directory to the xapian indexer script.Frederick Muriuki Muriithi
2025-02-03Bind virtuoso's TTL directory (readonly) to genenetwork container.Frederick Muriuki Muriithi
2025-02-03Bind virtuoso's ttl directory (read/write) to virtuoso container.Frederick Muriuki Muriithi
2025-02-03Add 'gn-virtuoso-ttl-directory' setting to genenetwork-configurationFrederick Muriuki Muriithi
2025-01-29Update SQL URI for uploader application.Frederick Muriuki Muriithi
2025-01-29Update the SQL URI for the uploader container.Frederick Muriuki Muriithi