| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2025-08-20 | Pass in the UID and GID under which the pola wrapper should run. change-working-dirs-to-tmp | Frederick Muriuki Muriithi | |
| 2025-08-20 | Provide runtime directory path to each 'least-authority-wrapper'. | Frederick Muriuki Muriithi | |
| 2025-08-19 | Change working directories for shepherd services to /tmp. | Frederick Muriuki Muriithi | |
| 2025-08-19 | Setup permissions for runtime directories. | Frederick Muriuki Muriithi | |
| 2025-08-19 | Create runtime directories for the different services. | Frederick Muriuki Muriithi | |
| 2025-08-19 | Update module for nss-certs. | Frederick Muriuki Muriithi | |
| 2025-08-18 | Revert "virtuoso-ose: patch in a temporary fix." | Frederick Muriuki Muriithi | |
| This reverts commit bffba8363575af62770875e0b70d040aacaf6730. 'virtuoso-ose' has been updated on mainline guix, so we no longer have to use our temporary version. | |||
| 2025-08-18 | gn-guile: Setup envvars for X.509 certificates. | Frederick Muriuki Muriithi | |
| 2025-08-18 | <genenetwork-configuration>: Track package of 'gn-guile' that's used | Frederick Muriuki Muriithi | |
| * genenetwork/services/genenetwork.scm (<genenetwork-configuration>): Add a configuration to track the 'gn-guile' package (version, build-flags, etc) that is used when setting up the container. | |||
| 2025-08-18 | Set runtime directory for gn-guile to writable dir. | Frederick Muriuki Muriithi | |
| 2025-08-18 | filesystem mappings: Expose gn-docs checkout parent to pola-wrapper. | Frederick Muriuki Muriithi | |
| 2025-08-18 | Activations: Make the parent dir of gn-docs repo checkout writable. | Frederick Muriuki Muriithi | |
| 2025-08-16 | Update virtuoso container to use our default paths, with examples. | Pjotr Prins | |
| Note that n3 thiples appear to work. See gemtext for more. | |||
| 2025-08-16 | virtuoso-ose: patch in a temporary fix. | Frederick Muriuki Muriithi | |
| 2025-08-16 | Add GN_GUILE_SERVER_URL | Munyoki Kilyungi | |
| 2025-08-16 | genenetwork-development: Add gn-guile forge-project. | Munyoki Kilyungi | |
| * genenetwork-development.scm (genenetwork-projects): Add gn-guile. | |||
| 2025-08-16 | genenetwork-development: Add missing guile port. | Munyoki Kilyungi | |
| * genenetwork-development.scm (genenetwork-shepherd-services): Add gn-guile-port. | |||
| 2025-08-16 | genenetwork-development: Add gn-guile to sudoers file. | Munyoki Kilyungi | |
| * genenetwork-development.scm (operating-sytem) [sudoers-file]: Add gn-guile. | |||
| 2025-08-16 | genenetwork-development: <genenetwork-configuration>: New field. | Munyoki Kilyungi | |
| * genenetwork-development.scm (<genenetwork-configuration>) [gn-guile-repository]: New field. | |||
| 2025-08-16 | genenetwork-development: Run gn-guile from gn-guile git path. | Munyoki Kilyungi | |
| 2025-08-15 | README | Pjotr Prins | |
| 2025-08-15 | README: comments | Pjotr Prins | |
| 2025-08-11 | gn-guile-port: provide missing config variable. | Frederick Muriuki Muriithi | |
| 2025-08-11 | Publish channel as either 'gn-bioinformatics or 'guix-bioinformatics | Frederick Muriuki Muriithi | |
| * Either name is acceptable. | |||
| 2025-08-11 | Revert "virtuoso-ose: patch in a temporary fix." | Frederick Muriuki Muriithi | |
| This reverts commit 6402ef859d0057ef4fa9b369dc26719a4c1def9f. | |||
| 2025-08-07 | virtuoso-ose: patch in a temporary fix. | Frederick Muriuki Muriithi | |
| 2025-08-07 | Provide missing config variable. | Frederick Muriuki Muriithi | |
| 2025-07-22 | Override redis with a custom-redis that's not dependent on syslogd. | Munyoki Kilyungi | |
| 2025-07-22 | Set path for lmdb. | Munyoki Kilyungi | |
| We currently use lmdb for storing genotype files. | |||
| 2025-07-22 | Add curl and coreutil-minimal to %base-packages. | Munyoki Kilyungi | |
| This helps when troubleshooting issues from inside the dev container. | |||
| 2025-07-22 | genenetwork-development: Set the profile and ssl-certs inside gexp. | Munyoki Kilyungi | |
| 2025-07-22 | genenetwork-development: Set utf-8 chars in mysql socket. | Munyoki Kilyungi | |
| 2025-07-22 | genenetwork-development: Set "TEST_FEATURE_SWITCH=True". | Munyoki Kilyungi | |
| 2025-07-21 | gn-libs: Use HTTP(s) URI rather than local file paths | Frederick Muriuki Muriithi | |
| Replace the local file path with a HTTP(s) URI in order to avoid problems with file permissions. This has the added benefit that the git server can be on a completely different (physical) host than the one that the CI/CD container runs in. | |||
| 2025-07-21 | gn-auth: Use http(s) URI rather than local file path. | Frederick Muriuki Muriithi | |
| Use HTTP(s) URIs rather than local file paths in order to avoid problems with file permissions. Re-activate the webhook for gn-auth to allow manual triggering. | |||
| 2025-07-21 | Merge branch 'main' of /home/git/public/gn-machines into main | Arun Isaac | |
| 2025-07-21 | dev: issue tracker settings | Arun Isaac | |
| 2025-07-21 | Set GN_GUILE_SERVER_URL for dev container (aka GN4) | Pjotr Prins | |
| 2025-07-19 | README: note on docs | Pjotr Prins | |
| 2025-07-02 | Add uploader service to production container. | Frederick Muriuki Muriithi | |
| 2025-07-02 | Increase timeout value for gn-auth and gn-uploader. | Frederick Muriuki Muriithi | |
| 2025-07-02 | Define setting for the asynchronous/background jobs sqlite db. | Frederick Muriuki Muriithi | |
| 2025-07-02 | Production: Reorganise filesystem paths for sqlite databases. | Frederick Muriuki Muriithi | |
| 2025-07-02 | Provide common host directory for sqlite databases. | Frederick Muriuki Muriithi | |
| 2025-07-02 | Production: bind the gn-docs repository to the container. | Frederick Muriuki Muriithi | |
| 2025-07-02 | Production: Update filesystem paths from `/export2/*` to `/export/*` | Frederick Muriuki Muriithi | |
| 2025-07-02 | Update filesystem shares for "public-sparql" container. | Frederick Muriuki Muriithi | |
| 2025-04-03 | ACME: Allow acme service to restart nginx with no sudo password | Frederick Muriuki Muriithi | |
| 2025-04-03 | public-sparql: use the /export2 disk. | Frederick Muriuki Muriithi | |
| 2025-04-03 | public-sparql: Separate instance dir from data directories | Frederick Muriuki Muriithi | |
| The "allowed" directories are directories other than the instance directory, which virtuoso can access to load data. | |||
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