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Diffstat (limited to 'uploader-deploy.sh')
| -rwxr-xr-x | uploader-deploy.sh | 60 |
1 files changed, 60 insertions, 0 deletions
diff --git a/uploader-deploy.sh b/uploader-deploy.sh new file mode 100755 index 0000000..77a91e6 --- /dev/null +++ b/uploader-deploy.sh @@ -0,0 +1,60 @@ +#! /bin/bash -e + +# genenetwork-machines --- Guix configuration for genenetwork machines +# Copyright © 2022, 2024 Arun Isaac <arunisaac@systemreboot.net> +# Copyright © 2022, 2024 Frederick M. Muriithi <fredmanglis@gmail.com> +# +# This file is part of genenetwork-machines. +# +# genenetwork-machines is free software: you can redistribute it +# and/or modify it under the terms of the GNU General Public License +# as published by the Free Software Foundation, either version 3 of +# the License, or (at your option) any later version. +# +# genenetwork-machines is distributed in the hope that it will be +# useful, but WITHOUT ANY WARRANTY; without even the implied warranty +# of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with genenetwork-machines. If not, see +# <https://www.gnu.org/licenses/>. + +# Build and install genenetwork production container on tux02. + +SCRIPTARGS=("$@") + +MODULEARGS=() +if [ "${#SCRIPTARGS[@]}" -gt 0 ] +then + echo "===== Auxilliary module load paths =====" + for path in "${SCRIPTARGS[@]}" + do + echo "-L ${path}" + MODULEARGS+=("-L" "${path}") + done + echo "===== END: Auxilliary module load paths =====" +fi + +container_script=$(guix system container \ + "${MODULEARGS[@]}" \ + --network \ + --load-path=. \ + --verbosity=3 \ + --share=/export2/guix-containers/genenetwork/uploader/var/genenetwork=/var/genenetwork \ + --share=/export2/guix-containers/genenetwork/uploader/var/lib/acme=/var/lib/acme \ + --share=/export2/guix-containers/genenetwork/uploader/var/lib/mysql=/var/lib/mysql \ + --share=/export2/guix-containers/genenetwork/uploader/var/lib/virtuoso=/var/lib/virtuoso \ + --share=/export2/guix-containers/genenetwork/uploader/var/log=/var/log \ + --share=/export2/guix-containers/genenetwork/uploader/etc/genenetwork=/etc/genenetwork \ + --expose=/export/data/uploader/genenetwork-xapian=/export/data/genenetwork-xapian \ + --share=/export/data/uploader/genenetwork-sqlite=/export/data/genenetwork-sqlite \ + --expose=/export/data/genenetwork/genotype_files=/export/data/genenetwork/genotype_files \ + --expose=/export/data/uploader/genenetwork3 \ + --expose=/export/data/uploader/gn-uploader \ + --share=/var/run/mysqld3307=/run/mysqld \ + uploader.scm) + +echo "${container_script}" +sudo ln --force --symbolic "${container_script}" /usr/local/bin/genenetwork-uploader-container +sudo ln --force --symbolic /usr/local/bin/genenetwork-uploader-container /var/guix/gcroots |