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Diffstat (limited to 'specials/gndev-deploy.sh')
-rwxr-xr-x | specials/gndev-deploy.sh | 64 |
1 files changed, 64 insertions, 0 deletions
diff --git a/specials/gndev-deploy.sh b/specials/gndev-deploy.sh new file mode 100755 index 0000000..c25df03 --- /dev/null +++ b/specials/gndev-deploy.sh @@ -0,0 +1,64 @@ +#! /bin/bash -e + +# This is a development machine used by Pjotr +# +# genenetwork-machines --- Guix configuration for genenetwork machines +# Copyright © 2022, 2024 Arun Isaac <arunisaac@systemreboot.net> +# +# This file is part of genenetwork-machines. +# +# genenetwork-machines is free software: you can redistribute it +# and/or modify it under the terms of the GNU General Public License +# as published by the Free Software Foundation, either version 3 of +# the License, or (at your option) any later version. +# +# genenetwork-machines is distributed in the hope that it will be +# useful, but WITHOUT ANY WARRANTY; without even the implied warranty +# of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with genenetwork-machines. If not, see +# <https://www.gnu.org/licenses/>. + +# See also https://issues.genenetwork.org/topics/systems/fire-up-genenetwork-system-container + +# this script should not be run as root. +if [ "$EUID" -eq 0 ] + then echo "Please do not run as root." + exit +fi + +echo Build and install genenetwork gndev container on $HOSTNAME + +mkdir -p /export2/guix-containers/gndev/tmp +rm -rf /export2/guix-containers/gndev/tmp/ # muck out +touch /export2/guix-containers/gndev/tmp/gndev-tmp +mkdir -p /export2/guix-containers/gndev/var/lib/acme +mkdir -p /export2/guix-containers/genenetwork/etc/genenetwork +mkdir -p /export2/data/gndev-xapian +mkdir -p /export2/data/gndev-sqlite +mkdir -p /export/data/gndev/genotype_files + +# Note that if you change these paths you need to rebuild the container +container_script=$(~/opt/guix-gndev/bin/guix system container \ + --network \ + --load-path=.. -L ~/guix-bioinformatics \ + --verbosity=3 \ + --share=/export2/guix-containers/gndev/var/lib/acme=/var/lib/acme \ + --share=/export2/guix-containers/gndev/tmp=/var/tmp \ + --share=/export2/guix-containers/genenetwork/etc/genenetwork=/etc/genenetwork \ + --share=/export2/data/gndev-xapian \ + --share=/export2/data/gndev-sqlite \ + --expose=/export/data/genenetwork/genotype_files \ + --expose=/export/data/gndev \ + --share=/var/run/mysqld=/run/mysqld \ + --share=/export/source/gndev-debug \ + gndev.scm) + +name=/usr/local/bin/gndev-system-container +if [ $? == 0 ] ; then + echo "Create $name -> $container_script" + sudo ln --force --symbolic $container_script $name + sudo ln --force --symbolic /usr/local/bin/$name /var/guix/gcroots +fi |