diff options
Diffstat (limited to 'production.scm')
| -rw-r--r-- | production.scm | 67 |
1 files changed, 48 insertions, 19 deletions
diff --git a/production.scm b/production.scm index 399c921..ffa75da 100644 --- a/production.scm +++ b/production.scm @@ -1,5 +1,6 @@ ;;; genenetwork-machines --- Guix configuration for genenetwork machines ;;; Copyright © 2022–2024 Arun Isaac <arunisaac@systemreboot.net> +;;; Copyright © 2024 Frederick Muriuki Muriithi <fredmanglis@protonmail.com> ;;; ;;; This file is part of genenetwork-machines. ;;; @@ -17,6 +18,9 @@ ;;; along with genenetwork-machines. If not, see ;;; <https://www.gnu.org/licenses/>. +;;; This is the production genenetwork container currently deployed on +;;; tux04. + (use-modules (gnu) (genenetwork services genenetwork) ((gnu packages admin) #:select (shepherd)) @@ -40,37 +44,62 @@ "@include " %sudoers-specification "\nacme ALL = NOPASSWD: " (file-append shepherd "/bin/herd") " restart nginx\n")) (packages %base-packages) - (services (cons* (service mysql-service-type - (mysql-configuration - (auto-upgrade? #f))) - (service virtuoso-service-type + (services (cons* (service virtuoso-service-type (virtuoso-configuration - (server-port 7892) - (http-server-port 7893))) + (server-port 9892) + (http-server-port 9893) + (dirs-allowed (list "/export/data/virtuoso")) + (number-of-buffers 4000000) + (maximum-dirty-buffers 3000000) + (database-file "/var/lib/virtuoso/genenetwork-virtuoso.db") + (transaction-file "/var/lib/virtuoso/genenetwork-virtuoso.trx"))) (service forge-nginx-service-type (forge-nginx-configuration (http-listen (forge-ip-socket (ip "0.0.0.0") - (port 7890))) + (port 9890))) (https-listen (forge-ip-socket (ip "0.0.0.0") - (port 7891))))) + (port 9891))))) (service acme-service-type (acme-configuration (email "arunisaac@systemreboot.net"))) + (service redis-service-type + (redis-configuration + (bind "127.0.0.1") + (port 6379) + (working-directory "/var/lib/redis"))) (service genenetwork-service-type (genenetwork-configuration - (server-name "test1.genenetwork.org") - (gn-auth-server-name "test1-auth.genenetwork.org") - (gn2-port 7894) - (gn3-port 7895) - (gn-auth-port 7896) - (sql-uri "mysql://webqtlout:webqtlout@localhost/db_webqtl") - (xapian-db "/export/data/genenetwork-xapian") - (genotype-files "/export/data/genenetwork/genotype_files") - (sparql-endpoint "http://localhost:7893/sparql") - (gn3-data-directory "/export/data/genenetwork") + (server-name "genenetwork.org") + (gn-auth-server-name "auth.genenetwork.org") + (gn2-port 9894) + (gn3-port 9895) + (gn-auth-port 9896) + (sql-uri + "mysql://webqtlout:webqtlout@localhost/db_webqtl?unix_socket=/run/mysqld/mysqld.sock&charset=utf8") + (xapian-db "/var/lib/xapian") + (sparql-endpoint "http://localhost:9893/sparql") + (gn3-data-directory "/var/genenetwork/data/genenetwork3") (gn2-secrets "/etc/genenetwork/genenetwork2") (gn3-secrets "/etc/genenetwork/genenetwork3/gn3-secrets.py") - (gn-auth-secrets "/etc/genenetwork/gn-auth"))) + (gn-auth-secrets "/etc/genenetwork/gn-auth") + (auth-db "/var/lib/genenetwork/sqlite/gn-auth/auth.db") + (llm-db-path "/var/lib/genenetwork/sqlite/genenetwork3/llm.db") + (gn3-alias-server-port 9800) + (gn-tmpdir "/opt/gn/tmp") + (gn-doc-git-checkout "/var/lib/gn-docs.git") + (log-level 'debug))) + (service gn-uploader-service-type + (gn-uploader-configuration + (server-name "uploader.genenetwork.org") + (port 9897) + (secrets "/etc/genenetwork/gn-uploader/gn-uploader-secrets.py") + (sql-uri + "mysql://webqtlout:webqtlout@localhost/db_webqtl?unix_socket=/run/mysqld/mysqld.sock&charset=utf8") + (data-directory "/var/lib/genenetwork/uploader/data") + (auth-server-url "https://auth.genenetwork.org/") + (gn2-server-url "https://genenetwork.org") + (sqlite-databases-directory "/var/lib/genenetwork/sqlite/gn-uploader") + (log-level 'debug))) %base-services))) |