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+;;; genenetwork-machines --- Guix configuration for genenetwork machines
+;;; Copyright © 2022–2024 Arun Isaac <arunisaac@systemreboot.net>
+;;; Copyright © 2024 Frederick Muriuki Muriithi <fredmanglis@protonmail.com>
+;;;
+;;; This file is part of genenetwork-machines.
+;;;
+;;; genenetwork-machines is free software: you can redistribute it
+;;; and/or modify it under the terms of the GNU General Public License
+;;; as published by the Free Software Foundation, either version 3 of
+;;; the License, or (at your option) any later version.
+;;;
+;;; genenetwork-machines is distributed in the hope that it will be
+;;; useful, but WITHOUT ANY WARRANTY; without even the implied
+;;; warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
+;;; See the GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with genenetwork-machines. If not, see
+;;; <https://www.gnu.org/licenses/>.
+
+;;; This is the production genenetwork container currently deployed on
+;;; tux04.
+
+(use-modules (gnu)
+ (genenetwork services genenetwork)
+ ((gnu packages admin) #:select (shepherd))
+ (gn services databases)
+ (gnu services databases)
+ (forge acme)
+ (forge nginx)
+ (forge socket))
+
+(operating-system
+ (host-name "genenetwork-gn2-fred")
+ (timezone "UTC")
+ (locale "en_US.utf8")
+ (bootloader (bootloader-configuration
+ (bootloader grub-bootloader)
+ (targets (list "/dev/sdX"))))
+ (file-systems %base-file-systems)
+ (users %base-user-accounts)
+ (sudoers-file
+ (mixed-text-file "sudoers"
+ "@include " %sudoers-specification
+ "\nacme ALL = NOPASSWD: " (file-append shepherd "/bin/herd") " restart nginx\n"))
+ (packages %base-packages)
+ (services (cons* (service forge-nginx-service-type
+ (forge-nginx-configuration
+ (http-listen (forge-ip-socket
+ (ip "0.0.0.0")
+ (port 10790)))
+ (https-listen (forge-ip-socket
+ (ip "0.0.0.0")
+ (port 10791)))))
+ (service acme-service-type
+ (acme-configuration
+ (email "arunisaac@systemreboot.net")))
+ (service genenetwork-service-type
+ (genenetwork-configuration
+ (server-name "gn2-fred.genenetwork.org")
+ (gn-auth-server-name "gn2-fred-auth.genenetwork.org")
+ (gn2-port 10794)
+ (gn3-port 10795)
+ (gn-auth-port 10796)
+ (sql-uri
+ "mysql://webqtlout:webqtlout@localhost/db_webqtl?unix_socket=/run/mysqld/mysqld.sock")
+ (xapian-db "/var/lib/xapian")
+ (sparql-endpoint "http://localhost:9893/sparql")
+ (gn3-data-directory "/var/genenetwork/data/genenetwork3")
+ (gn2-secrets "/etc/genenetwork/genenetwork2")
+ (gn3-secrets "/etc/genenetwork/genenetwork3/gn3-secrets.py")
+ (gn-auth-secrets "/etc/genenetwork/gn-auth")
+ (auth-db "/var/lib/genenetwork/sqlite/gn-auth/auth.db")
+ (llm-db-path "/var/lib/genenetwork/sqlite/genenetwork3/llm.db")
+ (gn3-alias-server-port 10700)
+ (gn-tmpdir "/opt/gn/tmp")
+ (log-level 'debug)))
+ (service gn-uploader-service-type
+ (gn-uploader-configuration
+ (server-name "gn2-fred-uploader.genenetwork.org")
+ (port 10797)
+ (secrets "/etc/genenetwork/gn-uploader/gn-uploader-secrets.py")
+ (sql-uri
+ "mysql://webqtlout:webqtlout@localhost/db_webqtl?unix_socket=/run/mysqld/mysqld.sock&charset=utf8")
+ (data-directory "/var/lib/genenetwork/uploader/data")
+ (auth-server-url "https://gn2-fred-auth.genenetwork.org/")
+ (gn2-server-url "https://gn2-fred.genenetwork.org")
+ (sqlite-databases-directory "/var/lib/genenetwork/sqlite/gn-uploader")
+ (log-level 'debug)))
+ %base-services)))