diff options
Diffstat (limited to 'genenetwork')
| -rw-r--r-- | genenetwork/services/genenetwork.scm | 50 |
1 files changed, 8 insertions, 42 deletions
diff --git a/genenetwork/services/genenetwork.scm b/genenetwork/services/genenetwork.scm index 5078f85..03e8e30 100644 --- a/genenetwork/services/genenetwork.scm +++ b/genenetwork/services/genenetwork.scm @@ -332,7 +332,6 @@ object." (gn2-profile (profile (content (package->development-manifest genenetwork2)) (allow-collisions? #t))) - (gn2-ca-bundle (file-append gn2-profile "/etc/ssl/certs/ca-certificates.crt")) (gn2-conf (computed-file "gn2.conf" (configuration-file-gexp `(("GN2_SECRETS" ,(string-append gn2-secrets "/gn2-secrets.py")) @@ -347,10 +346,6 @@ object." ("PLINK_COMMAND" ,(file-append gn2-profile "/bin/plink2")) ("SQL_URI" ,sql-uri) ("AI_SEARCH_ENABLED" "True"))))) - (gn3-profile (profile - (content (package->development-manifest genenetwork3)) - (allow-collisions? #t))) - (gn3-ca-bundle (file-append gn3-profile "/etc/ssl/certs/ca-certificates.crt")) (gn3-conf (computed-file "gn3.conf" (configuration-file-gexp `(("AUTH_DB" ,auth-db) @@ -362,10 +357,6 @@ object." ("GENOTYPE_FILES" ,genotype-files) ("REAPER_COMMAND" ,(file-append gn2-profile "/bin/qtlreaper")) ("LLM_DB_PATH" ,llm-db-path))))) - (gn-auth-profile (profile - (content (package->development-manifest gn-auth)) - (allow-collisions? #t))) - (gn-auth-ca-bundle (file-append gn-auth-profile "/etc/ssl/certs/ca-certificates.crt")) (gn-auth-conf (computed-file "gn-auth.conf" (configuration-file-gexp `(("GN_AUTH_SECRETS" ,(string-append gn-auth-secrets "/gn-auth-secrets.py")) @@ -393,10 +384,7 @@ object." (value gn2-conf)) (environment-variable (name "HOME") - (value "/tmp")) - (environment-variable - (name "REQUESTS_CA_BUNDLE") - (value gn2-ca-bundle)))) + (value "/tmp")))) (mappings (list database-mapping (file-system-mapping (source genotype-files) @@ -417,10 +405,7 @@ object." (file-system-mapping (source gn2-secrets) (target source) - (writable? #t)) - (file-system-mapping - (source gn2-ca-bundle) - (target source)))) + (writable? #t)))) (extra-cli-arguments (list "--log-level" (string-upcase (symbol->string log-level))))) @@ -447,10 +432,7 @@ object." (value gn3-secrets)) (environment-variable (name "HOME") - (value "/tmp")) - (environment-variable - (name "REQUESTS_CA_BUNDLE") - (value gn3-ca-bundle)))) + (value "/tmp")))) (mappings (list database-mapping (file-system-mapping (source gn3-conf) @@ -477,10 +459,7 @@ object." (file-system-mapping (source llm-db-path) (target source) - (writable? #t)) - (file-system-mapping - (source gn3-ca-bundle) - (target source)))) + (writable? #t)))) (extra-cli-arguments (list "--log-level" (string-upcase (symbol->string log-level))))) @@ -500,10 +479,7 @@ object." (value "/tmp")) (environment-variable (name "AUTHLIB_INSECURE_TRANSPORT") - (value "true")) - (environment-variable - (name "REQUESTS_CA_BUNDLE") - (value gn-auth-ca-bundle)))) + (value "true")))) (mappings (list database-mapping (file-system-mapping (source gn-auth-conf) @@ -515,10 +491,7 @@ object." (file-system-mapping (source gn-auth-secrets) (target source) - (writable? #t)) - (file-system-mapping - (source gn-auth-ca-bundle) - (target source)))) + (writable? #t)))) (extra-cli-arguments (list "--log-level" (string-upcase (symbol->string log-level))))))))) @@ -632,8 +605,7 @@ a @code{<genenetwork-configuration>} record." ("GN2_SERVER_URL" ,gn2-server-url))))) (gn-uploader-profile (profile (content (package->development-manifest gn-uploader)) - (allow-collisions? #t))) - (gn-uploader-ca-bundle (file-append gn-uploader-profile "/etc/ssl/certs/ca-certificates.crt"))) + (allow-collisions? #t)))) (list (gunicorn-app (name "gn-uploader") (package gn-uploader) @@ -650,10 +622,7 @@ a @code{<genenetwork-configuration>} record." (value "/tmp")) (environment-variable (name "GN_UPLOADER_ENVIRONMENT") - (value gn-uploader-profile)) - (environment-variable - (name "REQUESTS_CA_BUNDLE") - (value gn-uploader-ca-bundle)))) + (value gn-uploader-profile)))) (mappings (list database-mapping (file-system-mapping (source gn-uploader-conf) @@ -667,9 +636,6 @@ a @code{<genenetwork-configuration>} record." (writable? #t)) (file-system-mapping (source gn-uploader-profile) - (target source)) - (file-system-mapping - (source gn-uploader-ca-bundle) (target source)))) (extra-cli-arguments (list "--log-level" |