diff options
Diffstat (limited to 'genenetwork/services')
| -rw-r--r-- | genenetwork/services/genenetwork.scm | 50 |
1 files changed, 42 insertions, 8 deletions
diff --git a/genenetwork/services/genenetwork.scm b/genenetwork/services/genenetwork.scm index 6905686..b4c0806 100644 --- a/genenetwork/services/genenetwork.scm +++ b/genenetwork/services/genenetwork.scm @@ -305,6 +305,7 @@ object." (gn2-profile (profile (content (package->development-manifest genenetwork2)) (allow-collisions? #t))) + (gn2-ca-bundle (file-append gn2-profile "/etc/ssl/certs/ca-certificates.crt")) (gn2-conf (computed-file "gn2.conf" (configuration-file-gexp `(("GN2_SECRETS" ,(string-append gn2-secrets "/gn2-secrets.py")) @@ -319,6 +320,10 @@ object." ("PLINK_COMMAND" ,(file-append gn2-profile "/bin/plink2")) ("SQL_URI" ,sql-uri) ("AI_SEARCH_ENABLED" "True"))))) + (gn3-profile (profile + (content (package->development-manifest genenetwork3)) + (allow-collisions? #t))) + (gn3-ca-bundle (file-append gn3-profile "/etc/ssl/certs/ca-certificates.crt")) (gn3-conf (computed-file "gn3.conf" (configuration-file-gexp `(("AUTH_DB" ,auth-db) @@ -330,6 +335,10 @@ object." ("GENOTYPE_FILES" ,genotype-files) ("REAPER_COMMAND" ,(file-append gn2-profile "/bin/qtlreaper")) ("LLM_DB_PATH" ,llm-db-path))))) + (gn-auth-profile (profile + (content (package->development-manifest gn-auth)) + (allow-collisions? #t))) + (gn-auth-ca-bundle (file-append gn-auth-profile "/etc/ssl/certs/ca-certificates.crt")) (gn-auth-conf (computed-file "gn-auth.conf" (configuration-file-gexp `(("GN_AUTH_SECRETS" ,(string-append gn-auth-secrets "/gn-auth-secrets.py")) @@ -357,7 +366,10 @@ object." (value gn2-conf)) (environment-variable (name "HOME") - (value "/tmp")))) + (value "/tmp")) + (environment-variable + (name "REQUESTS_CA_BUNDLE") + (value gn2-ca-bundle)))) (mappings (list database-mapping (file-system-mapping (source genotype-files) @@ -378,7 +390,10 @@ object." (file-system-mapping (source gn2-secrets) (target source) - (writable? #t)))) + (writable? #t)) + (file-system-mapping + (source gn2-ca-bundle) + (target source)))) (extra-cli-arguments (list "--log-level" (string-upcase (symbol->string log-level))))) @@ -405,7 +420,10 @@ object." (value gn3-secrets)) (environment-variable (name "HOME") - (value "/tmp")))) + (value "/tmp")) + (environment-variable + (name "REQUESTS_CA_BUNDLE") + (value gn3-ca-bundle)))) (mappings (list database-mapping (file-system-mapping (source gn3-conf) @@ -432,7 +450,10 @@ object." (file-system-mapping (source llm-db-path) (target source) - (writable? #t)))) + (writable? #t)) + (file-system-mapping + (source gn3-ca-bundle) + (target source)))) (extra-cli-arguments (list "--log-level" (string-upcase (symbol->string log-level))))) @@ -452,7 +473,10 @@ object." (value "/tmp")) (environment-variable (name "AUTHLIB_INSECURE_TRANSPORT") - (value "true")))) + (value "true")) + (environment-variable + (name "REQUESTS_CA_BUNDLE") + (value gn-auth-ca-bundle)))) (mappings (list database-mapping (file-system-mapping (source gn-auth-conf) @@ -464,7 +488,10 @@ object." (file-system-mapping (source gn-auth-secrets) (target source) - (writable? #t))))))))) + (writable? #t)) + (file-system-mapping + (source gn-auth-ca-bundle) + (target source))))))))) (define (genenetwork-nginx-server-blocks config) "Return a list of @code{<nginx-server-configuration>} records specifying @@ -570,7 +597,8 @@ a @code{<genenetwork-configuration>} record." ("GN2_SERVER_URL" ,gn2-server-url))))) (gn-uploader-profile (profile (content (package->development-manifest gn-uploader)) - (allow-collisions? #t)))) + (allow-collisions? #t))) + (gn-uploader-ca-bundle (file-append gn-uploader-profile "/etc/ssl/certs/ca-certificates.crt"))) (list (gunicorn-app (name "gn-uploader") (package gn-uploader) @@ -587,7 +615,10 @@ a @code{<genenetwork-configuration>} record." (value "/tmp")) (environment-variable (name "GN_UPLOADER_ENVIRONMENT") - (value gn-uploader-profile)))) + (value gn-uploader-profile)) + (environment-variable + (name "REQUESTS_CA_BUNDLE") + (value gn-uploader-ca-bundle)))) (mappings (list database-mapping (file-system-mapping (source gn-uploader-conf) @@ -601,6 +632,9 @@ a @code{<genenetwork-configuration>} record." (writable? #t)) (file-system-mapping (source gn-uploader-profile) + (target source)) + (file-system-mapping + (source gn-uploader-ca-bundle) (target source)))) (extra-cli-arguments (list "--log-level" |