diff options
Diffstat (limited to 'genenetwork/services/genenetwork.scm')
| -rw-r--r-- | genenetwork/services/genenetwork.scm | 41 |
1 files changed, 36 insertions, 5 deletions
diff --git a/genenetwork/services/genenetwork.scm b/genenetwork/services/genenetwork.scm index 5c6b9f0..dd49be1 100644 --- a/genenetwork/services/genenetwork.scm +++ b/genenetwork/services/genenetwork.scm @@ -289,6 +289,33 @@ "gn2.scripts.sample_count" #$sql-uri))))) +(define (make-non-human-data-public-cron-gexp config) + (match-record config <genenetwork-configuration> + (gn-auth sql-uri auth-db) + (with-imported-modules '((guix build utils)) + #~(begin + (use-modules (guix build utils)) + + (setenv "PYTHONPATH" + (string-append + #$(file-append gn-auth + "/lib/python" + (python-version (package-version python)) + "/site-packages") + ":" + #$(profile + (content (package->development-manifest gn-auth)) + (allow-collisions? #t)) + "/lib/python" + #$(python-version (package-version python)) + "/site-packages")) + + (invoke #$(file-append python "/bin/python3") + "-m" + "scripts.batch_assign_data_to_default_admin" + #$auth-db + #$sql-uri))))) + (define (genenetwork-activation config) (match-record config <genenetwork-configuration> (gn2-secrets gn3-secrets gn-auth-secrets auth-db llm-db-path genotype-files gn-tmpdir gn-doc-git-checkout gn2-sessions-dir) @@ -450,7 +477,7 @@ object." (sockets (list (forge-ip-socket (port gn2-port)))) (wsgi-app-module "gn2.wsgi") - (workers 20) + (workers 10) (timeout 1200) (environment-variables (list (environment-variable @@ -509,7 +536,7 @@ object." (sockets (list (forge-ip-socket (port gn3-port)))) (wsgi-app-module "gn3.app:create_app()") - (workers 20) + (workers 10) ;; gunicorn's default 30 second timeout is insufficient ;; for Fahamu AI endpoints and results in worker timeout ;; errors. @@ -572,7 +599,7 @@ object." (sockets (list (forge-ip-socket (port gn-auth-port)))) (wsgi-app-module "gn_auth:create_app()") - (workers 20) + (workers 10) (timeout 1200) (environment-variables (list (environment-variable @@ -654,7 +681,11 @@ a @code{<genenetwork-configuration>} record." #:user "root") #~(job '(next-minute-from (next-hour) '(17)) ;17th minute of every hour #$(program-file "samples-count-script-gexp" - (samples-count-script-gexp config))))) + (samples-count-script-gexp config))) + #~(job '(next-minute (range 0 60 15)) + #$(program-file "make-non-human-data-public-cron-gexp" + (make-non-human-data-public-cron-gexp config)) + #:user "gunicorn-gn-auth"))) (define (gn-guile-gexp gn-guile-port gn-guile-pkg bare-repo) (with-imported-modules '((guix build utils)) @@ -800,7 +831,7 @@ a @code{<genenetwork-configuration>} record." (sockets (list (forge-ip-socket (port port)))) (wsgi-app-module "scripts.qcapp_wsgi:app") - (workers 20) + (workers 10) (timeout 1200) (environment-variables (list (environment-variable |