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Diffstat (limited to 'genenetwork-local-container.sh')
| -rwxr-xr-x | genenetwork-local-container.sh | 81 |
1 files changed, 81 insertions, 0 deletions
diff --git a/genenetwork-local-container.sh b/genenetwork-local-container.sh new file mode 100755 index 0000000..07d0662 --- /dev/null +++ b/genenetwork-local-container.sh @@ -0,0 +1,81 @@ +#! /bin/sh -e + +# genenetwork-machines --- Guix configuration for genenetwork machines +# Copyright © 2025 Munyoki Kilyungi <me@bonfacemunyoki.com> +# +# This file is part of genenetwork-machines. +# +# genenetwork-machines is free software: you can redistribute it +# and/or modify it under the terms of the GNU General Public License +# as published by the Free Software Foundation, either version 3 of +# the License, or (at your option) any later version. +# +# genenetwork-machines is distributed in the hope that it will be +# useful, but WITHOUT ANY WARRANTY; without even the implied warranty +# of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with genenetwork-machines. If not, see +# <https://www.gnu.org/licenses/>. + +# Build and install genenetwork production container on tux02. + +system_directories=("$HOME"/genenetwork/var/log + "$HOME"/genenetwork/var/genenetwork + "$HOME"/genenetwork/etc/genenetwork/conf + "$HOME"/genenetwork/etc/genenetwork + "$HOME"/genenetwork/var/lib/redis + "$HOME"/genenetwork/var/lib/virtuoso + "$HOME"/genenetwork/var/lib/xapian + "$HOME"/genenetwork/var/lib/genenetwork-sqlite + "$HOME"/genenetwork/var/lib/genenetwork-gnqa + /tmp/local-container) + +for dir in "${system_directories[@]}"; do + if [[ ! -d $dir ]]; then + mkdir -p $dir + fi +done + +gn_projects=(genenetwork2 genenetwork3) +for project in "${gn_projects[@]}"; do + dir="${HOME}/genenetwork/${project}" + if [[ ! -d $dir ]]; then + git clone "git@github.com:genenetwork/${project}" $dir + fi +done + +if [[ ! -d "${HOME}/genenetwork/gn-auth" ]]; then + git clone "https://git.genenetwork.org/gn-auth" "${HOME}/genenetwork/gn-auth" +fi + +if [[ ! -d "${HOME}/genenetwork/gn-docs" ]]; then + git clone --bare "https://git.genenetwork.org/gn-docs" "${HOME}/genenetwork/gn-docs" +fi + +container_script=$(guix system container \ + --network \ + --load-path=. \ + --verbosity=3 \ + --share="$HOME"/genenetwork/var/log=/var/log \ + --share="$HOME"/genenetwork/var/genenetwork=/var/genenetwork \ + --share="$HOME"/genenetwork/etc/genenetwork/conf=/etc/genenetwork/conf \ + --share="$HOME"/genenetwork/etc/genenetwork=/etc/genenetwork \ + --share="$HOME"/genenetwork/var/lib/redis=/var/lib/redis \ + --share="$HOME"/genenetwork/var/lib/virtuoso/=/var/lib/virtuoso \ + --share="$HOME"/genenetwork/genenetwork2=/genenetwork2 \ + --share="$HOME"/genenetwork/genenetwork3=/genenetwork3 \ + --share="$HOME"/genenetwork/gn-auth=/gn-auth \ + --share="$HOME"/genenetwork/var/lib/xapian=/var/lib/xapian \ + --share="$HOME"/genenetwork/var/lib/genenetwork-sqlite=/var/lib/genenetwork-sqlite \ + --share="$HOME"/genenetwork/var/lib/genenetwork-gnqa=/var/lib/genenetwork-gnqa \ + --share=/tmp/local-container=/tmp \ + --share="$HOME"/genenetwork/gn-docs=/var/lib/gn-docs \ + --share=/run/mysqld=/run/mysqld \ + genenetwork-local-container.scm) + +echo $container_script +sudo ln --force --symbolic $container_script /usr/local/bin/genenetwork-local-container +sudo ln --force --symbolic /usr/local/bin/genenetwork-local-container /var/guix/gcroots + |