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Diffstat (limited to 'README.org')
| -rw-r--r-- | README.org | 32 |
1 files changed, 27 insertions, 5 deletions
diff --git a/README.org b/README.org index 892ab23..2aa45db 100644 --- a/README.org +++ b/README.org @@ -3,19 +3,40 @@ containers. The git repo lives at https://git.genenetwork.org/gn-machines/ -* GeneNetwork development container +For CI/CD see -The GeneNetwork development container is currently run on /tux02/. It runs -continuous integration and continuous deployment services for -genenetwork2, genenetwork3 and several other associated projects. +=> https://issues.genenetwork.org/topics/systems/ci-cd + +For philosophy and (KISS) incremental minimalistic development containers, see: + +=> https://issues.genenetwork.org/topics/systems/debug-and-developing-code-with-genenetwork-system-container + +These are stored in the './minimal' directory of this repo. See the [[./minimal/README.md][README]]. + +* GeneNetwork development container (aka CI/CD) + +The GeneNetwork development container is currently run on /tux02/. +It runs continuous integration and continuous deployment services for genenetwork2, genenetwork3 and several other associated projects. To build and install the container, you will need the [[https://gitlab.com/genenetwork/guix-bioinformatics][guix-bioinformatics]] and [[https://git.systemreboot.net/guix-forge/][guix-forge]] channels. Once these channels are pulled and available, on /tux02/, run + #+BEGIN_SRC shell $ ./genenetwork-development-deploy.sh #+END_SRC +It will try to create symlinks at the end. You can do this as root (too). + +Note we current run as aruni user and the latest guix is the user profile. + +#+BEGIN_SRC shell +aruni@tux02:~/gn-machines$ which guix +/home/aruni/.config/guix/current/bin/guix +aruni@tux02:~/gn-machines$ guix describe +Generation 46 Mar 27 2025 23:39:42 (current) +#+END_SRC + /tux02/ is configured with a systemd service to run this container. Restart it. #+BEGIN_SRC shell @@ -31,6 +52,7 @@ To build and install the container, you will need the guix-bioinformatics channel. Once guix-bioinformatics is pulled and available, on /tux01/, run #+begin_src shell + $ ./virtuoso-deploy.sh #+end_src @@ -55,7 +77,7 @@ You can get a shell into the container with something like: sudo guix container exec 89086 /run/current-system/profile/bin/bash --login #+END_SRC -When you start the container, you can get a shell into the container using the ~nsenter~ command. You will need the process ID of the container, which you can see on container startup or on your can get with something like: +When you start the container, you can get a shell into the container using the ~nsenter~ command. You will need the process ID of the container, which you can see on container startup or by inspecting the output of the following ~ps~ command: #+BEGIN_SRC sh ps -u root -f --forest | grep -A4 '/usr/local/bin/genenetwork-development-container' | grep 'shepherd' |