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| -rwxr-xr-x | gn2-fred-deploy.sh | 47 | ||||
| -rw-r--r-- | gn2-fred.scm | 90 |
2 files changed, 137 insertions, 0 deletions
diff --git a/gn2-fred-deploy.sh b/gn2-fred-deploy.sh new file mode 100755 index 0000000..fe15db2 --- /dev/null +++ b/gn2-fred-deploy.sh @@ -0,0 +1,47 @@ +#! /bin/sh -e + +# genenetwork-machines --- Guix configuration for genenetwork machines +# Copyright © 2022, 2024 Arun Isaac <arunisaac@systemreboot.net> +# Copyright © 2024 Frederick Muriuki Muriithi <fredmanglis@protonmail.com> +# +# This file is part of genenetwork-machines. +# +# genenetwork-machines is free software: you can redistribute it +# and/or modify it under the terms of the GNU General Public License +# as published by the Free Software Foundation, either version 3 of +# the License, or (at your option) any later version. +# +# genenetwork-machines is distributed in the hope that it will be +# useful, but WITHOUT ANY WARRANTY; without even the implied warranty +# of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with genenetwork-machines. If not, see +# <https://www.gnu.org/licenses/>. + +# Build and install genenetwork production container on tux02. + +container_script=$(guix system container \ + --network \ + --load-path=. \ + --verbosity=3 \ + --share=/export/guix-containers/gn2-fred/var/genenetwork=/var/genenetwork \ + --share=/export/guix-containers/gn2-fred/var/lib/acme=/var/lib/acme \ + --share=/export/guix-containers/gn2-fred/var/lib/redis=/var/lib/redis \ + --share=/export/guix-containers/gn2-fred/var/lib/virtuoso=/var/lib/virtuoso \ + --share=/export/guix-containers/gn2-fred/var/log=/var/log \ + --share=/export/guix-containers/gn2-fred/etc/genenetwork=/etc/genenetwork \ + --share=/export/guix-containers/gn2-fred/var/lib/xapian=/var/lib/xapian \ + --share=/export/guix-containers/gn2-fred/var/lib/genenetwork/sqlite/gn-auth=/var/lib/genenetwork/sqlite/gn-auth \ + --share=/export/guix-containers/gn2-fred/var/lib/genenetwork/sqlite/genenetwork3=/var/lib/genenetwork/sqlite/genenetwork3 \ + --share=/var/run/mysqld=/run/mysqld \ + --share=/export/guix-containers/gn2-fred/tmp=/opt/gn/tmp \ + --share=/export/guix-containers/gn2-fred/var/genenetwork/sessions=/var/genenetwork/sessions \ + --share=/export/guix-containers/gn2-fred/var/lib/genenetwork/uploader=/var/lib/genenetwork/uploader \ + --share=/export/guix-containers/gn2-fred/var/lib/genenetwork/sqlite/gn-uploader=/var/lib/genenetwork/sqlite/gn-uploader \ + gn2-fred.scm) + +echo $container_script +sudo ln --force --symbolic $container_script /usr/local/bin/gn2-fred-container +sudo ln --force --symbolic /usr/local/bin/gn2-fred-container /var/guix/gcroots diff --git a/gn2-fred.scm b/gn2-fred.scm new file mode 100644 index 0000000..4aa6327 --- /dev/null +++ b/gn2-fred.scm @@ -0,0 +1,90 @@ +;;; genenetwork-machines --- Guix configuration for genenetwork machines +;;; Copyright © 2022–2024 Arun Isaac <arunisaac@systemreboot.net> +;;; Copyright © 2024 Frederick Muriuki Muriithi <fredmanglis@protonmail.com> +;;; +;;; This file is part of genenetwork-machines. +;;; +;;; genenetwork-machines is free software: you can redistribute it +;;; and/or modify it under the terms of the GNU General Public License +;;; as published by the Free Software Foundation, either version 3 of +;;; the License, or (at your option) any later version. +;;; +;;; genenetwork-machines is distributed in the hope that it will be +;;; useful, but WITHOUT ANY WARRANTY; without even the implied +;;; warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. +;;; See the GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with genenetwork-machines. If not, see +;;; <https://www.gnu.org/licenses/>. + +;;; This is the production genenetwork container currently deployed on +;;; tux04. + +(use-modules (gnu) + (genenetwork services genenetwork) + ((gnu packages admin) #:select (shepherd)) + (gn services databases) + (gnu services databases) + (forge acme) + (forge nginx) + (forge socket)) + +(operating-system + (host-name "genenetwork-gn2-fred") + (timezone "UTC") + (locale "en_US.utf8") + (bootloader (bootloader-configuration + (bootloader grub-bootloader) + (targets (list "/dev/sdX")))) + (file-systems %base-file-systems) + (users %base-user-accounts) + (sudoers-file + (mixed-text-file "sudoers" + "@include " %sudoers-specification + "\nacme ALL = NOPASSWD: " (file-append shepherd "/bin/herd") " restart nginx\n")) + (packages %base-packages) + (services (cons* (service forge-nginx-service-type + (forge-nginx-configuration + (http-listen (forge-ip-socket + (ip "0.0.0.0") + (port 10790))) + (https-listen (forge-ip-socket + (ip "0.0.0.0") + (port 10791))))) + (service acme-service-type + (acme-configuration + (email "arunisaac@systemreboot.net"))) + (service genenetwork-service-type + (genenetwork-configuration + (server-name "gn2-fred.genenetwork.org") + (gn-auth-server-name "gn2-fred-auth.genenetwork.org") + (gn2-port 10794) + (gn3-port 10795) + (gn-auth-port 10796) + (sql-uri + "mysql://webqtlout:webqtlout@localhost/db_webqtl?unix_socket=/run/mysqld/mysqld.sock") + (xapian-db "/var/lib/xapian") + (sparql-endpoint "http://localhost:9893/sparql") + (gn3-data-directory "/var/genenetwork/data/genenetwork3") + (gn2-secrets "/etc/genenetwork/genenetwork2") + (gn3-secrets "/etc/genenetwork/genenetwork3/gn3-secrets.py") + (gn-auth-secrets "/etc/genenetwork/gn-auth") + (auth-db "/var/lib/genenetwork/sqlite/gn-auth/auth.db") + (llm-db-path "/var/lib/genenetwork/sqlite/genenetwork3/llm.db") + (gn3-alias-server-port 10700) + (gn-tmpdir "/opt/gn/tmp") + (log-level 'debug))) + (service gn-uploader-service-type + (gn-uploader-configuration + (server-name "gn2-fred-uploader.genenetwork.org") + (port 10797) + (secrets "/etc/genenetwork/gn-uploader/gn-uploader-secrets.py") + (sql-uri + "mysql://webqtlout:webqtlout@localhost/db_webqtl?unix_socket=/run/mysqld/mysqld.sock&charset=utf8") + (data-directory "/var/lib/genenetwork/uploader/data") + (auth-server-url "https://gn2-fred-auth.genenetwork.org/") + (gn2-server-url "https://gn2-fred.genenetwork.org") + (sqlite-databases-directory "/var/lib/genenetwork/sqlite/gn-uploader") + (log-level 'debug))) + %base-services))) |