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| author | Pjotr Prins | 2024-04-01 01:59:51 -0500 |
|---|---|---|
| committer | Pjotr Prins | 2024-04-01 02:54:51 -0500 |
| commit | 0d551870499c886f900a5b87b2040db25e9a00cc (patch) | |
| tree | 26d5cf12383b405258baa1e3a1c513c6cd094fde /genenetwork | |
| parent | bfb58e7db7c8529fc45940528c8c443fe9c00fd4 (diff) | |
| download | gn-machines-0d551870499c886f900a5b87b2040db25e9a00cc.tar.gz | |
fallback: have gn2 and gn3 share a source directory so we can update/debug source code for development. See
topics/systems/debug-and-developing-code-with-genenetwork-system-container.gmi
Diffstat (limited to 'genenetwork')
| -rw-r--r-- | genenetwork/services/genenetwork.scm | 12 |
1 files changed, 11 insertions, 1 deletions
diff --git a/genenetwork/services/genenetwork.scm b/genenetwork/services/genenetwork.scm index 5e97454..0fc2fae 100644 --- a/genenetwork/services/genenetwork.scm +++ b/genenetwork/services/genenetwork.scm @@ -47,6 +47,7 @@ genenetwork-configuration-xapian-db genenetwork-configuration-genotype-files genenetwork-configuration-sparql-endpoint + genenetwork-configuration-gn-sourcecode-directory genenetwork-configuration-gn3-data-directory genenetwork-configuration-gn2-secrets genenetwork-configuration-gn3-secrets @@ -86,6 +87,8 @@ (default "/var/genenetwork/genotype-files")) (sparql-endpoint genenetwork-configuration-sparql-endpoint (default "http://localhost:8081/sparql")) + (gn-sourcecode-directory genenetwork-configuration-gn-sourcecode-directory + (default "/var/empty")) (gn3-data-directory genenetwork-configuration-gn3-data-directory (default "/var/genenetwork")) (gn2-secrets genenetwork-configuration-gn2-secrets @@ -180,7 +183,7 @@ G-expressions or numbers." described by @var{config}, a @code{<genenetwork-configuration>} object." (match-record config <genenetwork-configuration> - (genenetwork2 genenetwork3 gn-auth server-name gn-auth-server-name gn2-port gn3-port gn-auth-port sql-uri auth-db xapian-db genotype-files sparql-endpoint gn3-data-directory gn2-secrets gn3-secrets gn-auth-secrets) + (genenetwork2 genenetwork3 gn-auth server-name gn-auth-server-name gn2-port gn3-port gn-auth-port sql-uri auth-db xapian-db genotype-files sparql-endpoint gn-sourcecode-directory gn3-data-directory gn2-secrets gn3-secrets gn-auth-secrets) ;; If we mapped only the mysqld.sock socket file, it would break ;; when the external mysqld server is restarted. (let* ((database-mapping (file-system-mapping @@ -207,6 +210,7 @@ object." (configuration-file-gexp `(("AUTH_DB" ,auth-db) ("DATA_DIR" ,gn3-data-directory) + ("SOURCE_DIR" ,gn-sourcecode-directory) ("SPARQL_ENDPOINT" ,sparql-endpoint) ("SQL_URI" ,sql-uri) ("XAPIAN_DB_PATH" ,xapian-db))))) @@ -237,6 +241,9 @@ object." (source genotype-files) (target source)) (file-system-mapping + (source gn-sourcecode-directory) + (target source)) + (file-system-mapping (source gn2-conf) (target source)) (file-system-mapping @@ -274,6 +281,9 @@ object." (source gn3-secrets) (target source)) (file-system-mapping + (source gn-sourcecode-directory) + (target source)) + (file-system-mapping (source gn3-data-directory) (target source)) (file-system-mapping |