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| author | Frederick Muriuki Muriithi | 2024-11-04 10:13:01 -0600 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-11-04 10:31:56 -0600 |
| commit | 04506c4496e5ca8b3bc38e28ed70945a145fb036 (patch) | |
| tree | 605ba38edefdca4fbd7b6791e505fe9cdd05f125 /genenetwork/services/genenetwork.scm | |
| parent | ba402e6b12894b846a5adbbc3db54e9e230edf77 (diff) | |
| download | gn-machines-04506c4496e5ca8b3bc38e28ed70945a145fb036.tar.gz | |
Define REQUESTS_CA_BUNDLE envvar for python-requests
Define the `REQUESTS_CA_BUNDLE` for all applications that make use of
python's requests library. The library needs to know the location of
valid CA certificates in order to work as expected.
Diffstat (limited to 'genenetwork/services/genenetwork.scm')
| -rw-r--r-- | genenetwork/services/genenetwork.scm | 26 |
1 files changed, 22 insertions, 4 deletions
diff --git a/genenetwork/services/genenetwork.scm b/genenetwork/services/genenetwork.scm index ec66f64..1ea9ae2 100644 --- a/genenetwork/services/genenetwork.scm +++ b/genenetwork/services/genenetwork.scm @@ -349,6 +349,9 @@ object." ("PLINK_COMMAND" ,(file-append gn2-profile "/bin/plink2")) ("SQL_URI" ,sql-uri) ("AI_SEARCH_ENABLED" "True"))))) + (gn3-profile (profile + (content (package->development-manifest genenetwork3)) + (allow-collisions? #t))) (gn3-conf (computed-file "gn3.conf" (configuration-file-gexp `(("AUTH_DB" ,auth-db) @@ -360,6 +363,9 @@ object." ("GENOTYPE_FILES" ,genotype-files) ("REAPER_COMMAND" ,(file-append gn2-profile "/bin/qtlreaper")) ("LLM_DB_PATH" ,llm-db-path))))) + (gn-auth-profile (profile + (content (package->development-manifest gn-auth)) + (allow-collisions? #t))) (gn-auth-conf (computed-file "gn-auth.conf" (configuration-file-gexp `(("GN_AUTH_SECRETS" ,(string-append gn-auth-secrets "/gn-auth-secrets.py")) @@ -387,7 +393,10 @@ object." (value gn2-conf)) (environment-variable (name "HOME") - (value "/tmp")))) + (value "/tmp")) + (environment-variable + (name "REQUESTS_CA_BUNDLE") + (value (file-append gn2-profile "/etc/ssl/certs/ca-certificates.crt"))))) (mappings (list database-mapping (file-system-mapping (source genotype-files) @@ -435,7 +444,10 @@ object." (value gn3-secrets)) (environment-variable (name "HOME") - (value "/tmp")))) + (value "/tmp")) + (environment-variable + (name "REQUESTS_CA_BUNDLE") + (value (file-append gn3-profile "/etc/ssl/certs/ca-certificates.crt"))))) (mappings (list database-mapping (file-system-mapping (source gn3-conf) @@ -482,7 +494,10 @@ object." (value "/tmp")) (environment-variable (name "AUTHLIB_INSECURE_TRANSPORT") - (value "true")))) + (value "true")) + (environment-variable + (name "REQUESTS_CA_BUNDLE") + (value (file-append gn-auth-profile "/etc/ssl/certs/ca-certificates.crt"))))) (mappings (list database-mapping (file-system-mapping (source gn-auth-conf) @@ -630,7 +645,10 @@ a @code{<genenetwork-configuration>} record." (value "/tmp")) (environment-variable (name "GN_UPLOADER_ENVIRONMENT") - (value gn-uploader-profile)))) + (value gn-uploader-profile)) + (environment-variable + (name "REQUESTS_CA_BUNDLE") + (value (file-append gn-uploader-profile "/etc/ssl/certs/ca-certificates.crt"))))) (mappings (list database-mapping (file-system-mapping (source gn-uploader-conf) |