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| author | Arun Isaac | 2022-06-24 14:11:20 +0530 |
|---|---|---|
| committer | Arun Isaac | 2022-06-24 14:11:20 +0530 |
| commit | 96fb9608242254a1fc53bbd71168db4245458c8f (patch) | |
| tree | 6e7b7b429b8a41787048e6416772a07ac9c76d56 /genenetwork-development.scm | |
| parent | 073a754bfd4d2d2b3a6526245d26d676d61c987b (diff) | |
| download | gn-machines-96fb9608242254a1fc53bbd71168db4245458c8f.tar.gz | |
Send rapper output to /dev/null instead of using --ignore-errors.
The --ignore-errors flag not only avoids printing triples, but also
actually ignores errors. What a surprise! ;-) As a result, rapper does
not stop invalid turtle files, and they end up erroring out when
uploaded to virtuoso.
* genenetwork-development.scm (dump-genenetwork-database): Send rapper
output to /dev/null instead of using --ignore-errors.
Diffstat (limited to 'genenetwork-development.scm')
| -rw-r--r-- | genenetwork-development.scm | 17 |
1 files changed, 9 insertions, 8 deletions
diff --git a/genenetwork-development.scm b/genenetwork-development.scm index 00f8927..1665b44 100644 --- a/genenetwork-development.scm +++ b/genenetwork-development.scm @@ -579,14 +579,15 @@ command to be executed." (invoke "./pre-inst-env" "./dump.scm" connection-settings-file dump-directory) - ;; Validate dumped RDF. - (invoke #$(file-append raptor2 "/bin/rapper") - "--input" "turtle" - "--count" - ;; We use --ignore-errors because we don't want to - ;; print out potentially sensitive data. - "--ignore-errors" - (string-append dump-directory "/dump.ttl")) + ;; Validate dumped RDF, sending the error output to + ;; oblivion because we don't want to print out potentially + ;; sensitive data. + (with-error-to-file "/dev/null" + (cut invoke + #$(file-append raptor2 "/bin/rapper") + "--input" "turtle" + "--count" + (string-append dump-directory "/dump.ttl"))) ;; Load RDF into virtuoso. (invoke "./pre-inst-env" "./load-rdf.scm" connection-settings-file |