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| author | Arun Isaac | 2022-11-04 15:42:32 +0530 |
|---|---|---|
| committer | Arun Isaac | 2022-11-04 15:42:32 +0530 |
| commit | 082072f374572b192831aac3c0a2d6e3e46fac79 (patch) | |
| tree | a1875ac60e85f7999ec816e59f2f3841050e157d /genenetwork-development.scm | |
| parent | 445e0355d2735ac8ace37c2f84f852c66915c47c (diff) | |
| download | gn-machines-082072f374572b192831aac3c0a2d6e3e46fac79.tar.gz | |
Import GeneRIF by calling the unified dump script.
* genenetwork-development.scm (dump-genenetwork-database): Import
GeneRIF by calling the unified dump script.
Diffstat (limited to 'genenetwork-development.scm')
| -rw-r--r-- | genenetwork-development.scm | 13 |
1 files changed, 3 insertions, 10 deletions
diff --git a/genenetwork-development.scm b/genenetwork-development.scm index ce9a114..c30f634 100644 --- a/genenetwork-development.scm +++ b/genenetwork-development.scm @@ -584,11 +584,6 @@ described by CONFIG, a <genenetwork-configuration> object." (invoke "./pre-inst-env" "./dump.scm" connection-settings-file dump-directory) - ;; Import GeneRIF into RDF. - (invoke "./pre-inst-env" "./import-generif.scm" - (string-append #$%dump-genenetwork-database-export-directory - "/generifs_basic.gz") - dump-directory) ;; Validate dumped RDF, sending the error output to ;; oblivion because we don't want to print out potentially ;; sensitive data. @@ -599,11 +594,9 @@ described by CONFIG, a <genenetwork-configuration> object." "--count" (string-append dump-directory "/dump.ttl"))) ;; Load RDF into virtuoso. - (for-each (lambda (ttl) - (invoke "./pre-inst-env" "./load-rdf.scm" - connection-settings-file - (string-append dump-directory "/" ttl))) - (list "dump.ttl" "generif.ttl")) + (invoke "./pre-inst-env" "./load-rdf.scm" + connection-settings-file + (string-append dump-directory "/dump.ttl")) ;; Visualize schema and archive results. (invoke "./pre-inst-env" "./visualize-schema.scm" connection-settings-file) |