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authorArun Isaac2022-04-15 13:56:27 +0530
committerArun Isaac2022-04-15 13:56:27 +0530
commitd2b84265ad7068c6a22fa04f2820b80a0f481a78 (patch)
tree7a597c95a8dc9469dee1d8051508210ae1996ce3 /genenetwork-development-deploy.sh
downloadgn-machines-d2b84265ad7068c6a22fa04f2820b80a0f481a78.tar.gz
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+#! /bin/sh -e
+
+# genenetwork-machines --- Guix configuration for genenetwork machines
+# Copyright © 2022 Arun Isaac <arunisaac@systemreboot.net>
+#
+# This file is part of genenetwork-machines.
+#
+# genenetwork-machines is free software: you can redistribute it
+# and/or modify it under the terms of the GNU General Public License
+# as published by the Free Software Foundation, either version 3 of
+# the License, or (at your option) any later version.
+#
+# genenetwork-machines is distributed in the hope that it will be
+# useful, but WITHOUT ANY WARRANTY; without even the implied warranty
+# of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+# General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with genenetwork-machines. If not, see
+# <https://www.gnu.org/licenses/>.
+
+# Build and install genenetwork development container on penguin2.
+
+container_script=$(guix system container --network \
+ --verbosity=3 \
+ --load-path=. \
+ --share=/var/guix/daemon-socket=/var/host-guix/daemon-socket \
+ --share=/var/guix-containers/genenetwork-development/var/lib/laminar=/var/lib/laminar \
+ --expose=/export/data/genenetwork/genotype_files \
+ --share=/export/genenetwork-database-dump \
+ --share=/var/run/mysqld/mysqld.sock=/run/mysqld/mysqld.sock \
+ --share=/var/guix-containers/genenetwork-development/srv/http=/srv/http \
+ genenetwork-development.scm)
+
+echo $container_script
+sudo ln --force --symbolic $container_script /usr/local/bin/genenetwork-development-container