Simple gn-guile system container builds

3 files changed, 101 insertions, 1 deletions

diff --git a/genenetwork-development.scm b/genenetwork-development.scm
index e18b317..7f727ca 100644
--- a/genenetwork-development.scm
+++ b/genenetwork-development.scm
@@ -700,8 +700,39 @@ described by CONFIG, a <genenetwork-configuration> object."
 
 
 ;;;
+;;; qc
+;;;
+
+(define qc-tests
+  (with-imported-modules (cons '(guix build lisp-utils)
+                               (source-module-closure '((genenetwork development-helper))
+                                                      #:select? import-module?))
+    #~(lambda (source)
+        ((@@ (genenetwork development-helper)
+             asdf-test-gexp)
+         source
+         #$(profile
+            (content (package->development-manifest sbcl-qc))
+            (allow-collisions? #t))
+         "qc" (list "qc.asd")))))
+
+(define qc-project
+  (forge-project
+   (name "qc")
+   (repository "https://git.genenetwork.org/jgart/qc")
+   (ci-jobs (list (forge-laminar-job
+                   (name "qc")
+                   (run (derivation-job-gexp
+                         this-forge-project
+                         this-forge-laminar-job
+                         qc-tests
+                         #:guix-daemon-uri %guix-daemon-uri)))))
+   (ci-jobs-trigger 'webhook)))
+
+
+;;;
 ;;; transform-genenetwork-database
-;;; 
+;;;
 
 ;; Path to genenetwork database dump export directory that has lots of
 ;; free space
diff --git a/services/README.md b/services/README.md
new file mode 100644
index 0000000..d0d1c01
--- /dev/null
+++ b/services/README.md
@@ -0,0 +1,17 @@
+# Services
+
+This directory contains small and simple services that may be run independently.
+Note that composition is not the goal.
+For example, databases and web proxies are handled outsite the containers.
+Use these services for simple deployment and ad hoc testing.
+One nice aspect of small system containers is that you can run these easily on your laptop.
+
+IMPORTANT: more complex services do not belong in this directory.
+
+# Examples
+
+## gn-guile
+
+`gn-guile` is our next generation service (gn4?). It provides a REST API, at this point, and some portals, such as https://aging.genenetwork.org/.
+
+See the [gn-guile](./gn-guile.scm) system definition example.
diff --git a/services/gn-guile.scm b/services/gn-guile.scm
new file mode 100644
index 0000000..2f675a8
--- /dev/null
+++ b/services/gn-guile.scm
@@ -0,0 +1,52 @@
+;; This is an example definition for the gn-guile/GN4 service
+;;
+;; Run with
+;;
+;;   export runner=$(guix system container gn-guile.scm)
+;;
+;; as root
+;;
+;;   sudo bash -c $runner
+;;   echo $runner
+;;
+;; make a note of pid and
+;;
+;;   sudo bash -c "nsenter -a -t 4050285"
+;;
+;; now you should be inside the container (note bash should be in the container!)
+
+(use-modules (gnu)
+             (guix records)
+             (forge utils))
+
+(define-record-type* <gn-guile-configuration>
+  gn-guile-configuration make-gn-guile-configuration
+  gn-guile-configuration?
+  (gn2-repository gn-guile-configuration-gn2-repository
+                  (default "https://github.com/genenetwork/genenetwork2"))
+  (gn2-port gn-guile-configuration-gn2-port
+            (default 8082)))
+
+
+(define gn-guile-service-type
+  (service-type
+   (name 'gn-guile)
+   (description "gn-guile/GN4 webservice")
+   (extensions '())
+   ))
+
+(operating-system
+ (host-name "gn-guile")
+ (timezone "UTC")
+ (locale "en_US.utf8")
+ (bootloader (bootloader-configuration
+              (bootloader grub-bootloader)
+              (targets (list "/dev/sdX"))))
+ (file-systems %base-file-systems)
+ (users %base-user-accounts)
+ (packages %base-packages)
+
+ (services (cons
+            (service gn-guile-service-type
+                     (gn-guile-configuration))
+            %base-services)))