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| author | Frederick Muriuki Muriithi | 2024-12-06 16:05:35 -0600 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-12-06 16:05:35 -0600 |
| commit | 10dafe26eb91a44775d7dcb0f9e12df72f6068fc (patch) | |
| tree | 7ae42a21df3e98a6cecad8ac2891e7099202416f | |
| parent | 0273e4844f8e14d5b9fe4fd715ff9b87c1bb1e94 (diff) | |
| download | gn-machines-main.tar.gz | |
| -rw-r--r-- | genenetwork-development.scm | 10 |
1 files changed, 5 insertions, 5 deletions
diff --git a/genenetwork-development.scm b/genenetwork-development.scm index 5894cef..32259d6 100644 --- a/genenetwork-development.scm +++ b/genenetwork-development.scm @@ -222,7 +222,7 @@ executed." (setenv "GN3_LOCAL_URL" (string-append "http://localhost:" (number->string #$gn3-port))) (setenv "GENENETWORK_FILES" #$genotype-files) (setenv "HOME" "/tmp") - (setenv "SQL_URI" "mysql://webqtlout:webqtlout@localhost/db_webqtl") + (setenv "SQL_URI" "mysql://webqtlout:webqtlout@localhost/db_webqtl?unix_socket=/run/mysqld/mysqld.sock") (chdir "genenetwork2") (apply invoke '#$test-command)))))) @@ -252,7 +252,7 @@ genenetwork3 source from the latest commit of @var{project}." (setenv "PYTHONPATH" (getcwd)) (invoke "./scripts/index-genenetwork" "create-xapian-index" xapian-build-directory - "mysql://webqtlout:webqtlout@localhost/db_webqtl" + "mysql://webqtlout:webqtlout@localhost/db_webqtl?unix_socket=/run/mysqld/mysqld.sock" "http://localhost:9082/sparql") ;; Stop genenetwork3, replace old xapian index and ;; start genenetwork3. @@ -297,7 +297,7 @@ genenetwork3 source from the latest commit of @var{project}." (system* (string-append gn3-dir "/scripts/index-genenetwork") "is-data-modified" #$%xapian-directory - "mysql://webqtlout:webqtlout@localhost/db_webqtl" + "mysql://webqtlout:webqtlout@localhost/db_webqtl?unix_socket=/run/mysqld/mysqld.sock" "http://localhost:9082/sparql")))) (setenv "LAMINAR_REASON" "Nightly xapian index rebuild") (invoke #$(file-append laminar "/bin/laminarc") @@ -462,7 +462,7 @@ server described by CONFIG, a <genenetwork-configuration> object." #$(string-append "http://localhost:" (number->string gn3-port))) (setenv "GENENETWORK_FILES" #$genotype-files) - (setenv "SQL_URI" "mysql://webqtlout:webqtlout@localhost/db_webqtl") + (setenv "SQL_URI" "mysql://webqtlout:webqtlout@localhost/db_webqtl?unix_socket=/run/mysqld/mysqld.sock") (setenv "HOME" "/tmp") (setenv "NO_REDIS" "no-redis") (setenv "RUST_BACKTRACE" "1") @@ -478,7 +478,7 @@ server described by CONFIG, a <genenetwork-configuration> object." "\"\n" "GN_SERVER_URL=\"https://cd.genenetwork.org/api3/\"\n" "AUTH_SERVER_URL=\"https://auth-cd.genenetwork.org/\"\n" - "SQL_URI=\"mysql://webqtlout:webqtlout@localhost/db_webqtl\"\n" + "SQL_URI=\"mysql://webqtlout:webqtlout@localhost/db_webqtl?unix_socket=/run/mysqld/mysqld.sock\"\n" "SSL_PRIVATE_KEY=\"" gn2-secrets "/gn2-ssl-private-key.pem\"\n" "AUTH_SERVER_SSL_PUBLIC_KEY=\"" gn2-secrets "/gn-auth-ssl-public-key.pem\"\n")) |