From 71c8e03b77dc094567c3b522909d7aa6995585f4 Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Fri, 17 Nov 2023 12:19:15 +0100
Subject: Now we have a list of strain names for the BXD

---
 gn/data/strains.scm | 19 ++++++++++++++++---
 1 file changed, 16 insertions(+), 3 deletions(-)

(limited to 'gn')

diff --git a/gn/data/strains.scm b/gn/data/strains.scm
index 275c4cd..b3e6744 100644
--- a/gn/data/strains.scm
+++ b/gn/data/strains.scm
@@ -12,11 +12,24 @@
   #:use-module (web gn-uri)
 
   #:export (
-            strain-names
+            strain-id-names
+            bxd-strain-id-names
             ))
 
-(define (strain-names)
+(define* (strain-id-names inbred-set #:key (map? #f))
+  "Return assoc list of tuples of strain id+names, e.g.
+
+   ((4 . BXD1) (5 . BXD2) (6 . BXD5) (7 . BXD6)...
+"
   (call-with-db
    (lambda (db)
-      (dbi-query db "SELECT StrainId,Strain.Name FROM Strain, StrainXRef WHERE StrainXRef.StrainId = Strain.Id AND StrainXRef.InbredSetId = 1 AND Used_for_mapping='Y' ORDER BY StrainId;")
+     (dbi-query db (string-append "SELECT StrainId,Strain.Name FROM Strain, StrainXRef WHERE StrainXRef.StrainId = Strain.Id AND StrainXRef.InbredSetId = " (format #f "~d" inbred-set)
+                                  (if map?
+                                      " AND Used_for_mapping='Y'"
+                                      "")
+                                  " ORDER BY StrainId;"))
       (get-rows-apply db (lambda (r) `(,(assoc-ref r "StrainId") . ,(assoc-ref r "Name"))) '()))))
+
+(define* (bxd-strain-id-names #:key (map? #f))
+  "Return assoc list of tuples of strain id + names. Same as strain-id-names, but just for the BXD"
+   (strain-id-names 1))
-- 
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