From 162b4c5cfb49766c66d274f9ddb414f6bd4d087e Mon Sep 17 00:00:00 2001
From: Pjotr Prins
Date: Fri, 5 Jan 2024 09:27:39 +0100
Subject: Precompute will run gemma and update the DB status

---
 gn/data/hits.scm | 13 ++++++++++++-
 1 file changed, 12 insertions(+), 1 deletion(-)

(limited to 'gn/data')

diff --git a/gn/data/hits.scm b/gn/data/hits.scm
index 5108bd0..29d377b 100644
--- a/gn/data/hits.scm
+++ b/gn/data/hits.scm
@@ -15,6 +15,7 @@
   #:export (
             get-precompute-hit
             set-precompute-hit-status!
+            update-precompute!
             ))
 
 (define (get-precompute-hit db prev-id)
@@ -22,9 +23,19 @@
   (get-row db))
 
 (define (set-precompute-hit-status! db data-id-str status-str)
-  "Set status of precompute record - typically 'RUN' or 'NON-BXD'.
+  "Set status of precompute record - typically from NULL to 'GEMMA-START' or 'NON-BXD'.
+On completion it is set to 'GEMMA-DONE'.
 This is a temporary measure to get precompute going.
 Note we are counting on automated MariaDB transactions to not compete."
   (dbi-query db (string-append "UPDATE ProbeSetXRef SET Locus_old=\"" status-str "\" WHERE DataId=" data-id-str " AND Locus_old is NULL"))
   (ensure db)
   )
+
+;; MariaDB [db_webqtl]> UPDATE ProbeSetXRef SET Locus_old=Locus,LRS_old=LRS,Locus="new",LRS=9.9,pValue=1.0,additive=1.0 WHERE ProbeSetFreezeId=1 AND DataId=2 AND Locus_old="GEMMA-START" ;
+
+(define (update-precompute! db data-id-str status-str locus lrs pvalue, additive)
+  "Once precompute is run we can update the table moving old values and plugging in the new.
+"
+  (dbi-query db (string-append "UPDATE ProbeSetXRef SET Locus_old=Locus,LRS_old=LRS,Locus=\"" locus "\",LRS=" lrs ",pValue=" pvalue ",additive=" additive " WHERE DataId=" data-id-str " AND Locus_old is \"GEMMA-START\""))
+  (ensure db)
+  )
-- 
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