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30 hoursSetup initial CLI configurations. fredm/use-cli-argsFrederick Muriuki Muriithi
We want to move away from using global values for our configuration. In this respect, we provide a way to provide configurations at application startup via CLI arguments.
33 hoursImprove config variables' names. HEAD mainFrederick Muriuki Muriithi
Provide better names for the configuration variables to more clearly indicate what the variable is concerned with.
33 hoursSync gn-docs from remote.Frederick Muriuki Muriithi
To ensure we have the latest changes, sync gn-docs before every edit.
2026-02-18Rename variable for clarity.Frederick Muriuki Muriithi
The 'CGIT_REPO_PATH' envvar and corresponding global `+cgit-repo-path+` configuration variable were both pointing to the bare repo that's upstream somewhere. Using the term "bare" rather than "cgit" is more descriptive of what the variable is concerned with, rather than the term "cgit" which is dependent on a specific forge/forge-type.
2026-01-23Add content negotiation when fetching RDF metadata.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2026-01-14Add RDF end-points for resolving RDF urls.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-11-18UM-HET3 remove ole-man and add referrersPjotr Prins
2025-11-18READMEPjotr Prins
2025-11-03Use the guix shell one layer upPjotr Prins
2025-11-03Add note on guix-shellPjotr Prins
2025-10-04Reintroduce my shellPjotr Prins
2025-09-21Render subdir of home/agingPjotr Prins
2025-09-21Working on aging linksPjotr Prins
2025-08-22Bump webserve copyrightsPjotr Prins
2025-08-12Remove fibers as suggested by Arun's patch:Pjotr Prins
=> https://cgit.git.savannah.gnu.org/cgit/guix/mumi.git/commit/?id=897967a84d3f51da2b1cc8c3ee942fd14f4c669b After getting: In procedure accept: Too many open files with GET /dataset/bxd-publish/values/23486.json
2025-08-11APIPjotr Prins
2025-08-07Disable .gemma API endpointPjotr Prins
2025-08-02API: endpoint gets trait values for BXD in GEMMA formatPjotr Prins
2025-08-02Write gemma trait values (pheno file)Pjotr Prins
2025-08-02API: add .json extensionPjotr Prins
2025-08-02API: create values endpoint that returns a dict onlyPjotr Prins
2025-07-30Create endpoint for mappable BXD values as dataset/bxd-publish/mapping/valuesPjotr Prins
2025-07-30Create endpoint for dataset/bxd-publish/listPjotr Prins
2025-07-22Revert "Add missing import."Munyoki Kilyungi
This reverts commit 57118453a7ab776ec2259f4d59bd4a0c8213d9d0.
2025-07-22Revert "Test webhook."Munyoki Kilyungi
This reverts commit a2639cac7be578f160c14a4eeb77a23b859bb64a.
2025-07-22Add missing import.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-07-22Test webhook.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-07-22Revert "Test webhook."Munyoki Kilyungi
This reverts commit 9836105b0c662f8f6e0cf5eb30721d1f1f06976c.
2025-07-22Test webhook.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2025-07-16Aliases: make it work in the webserver. You can now try:Pjotr Prins
curl http://127.0.0.1:8091/gene/aliases/Shh ["9530036O11Rik","Dsh","Hhg1","Hx","Hxl3","M100081","ShhNC","sonic hedgehog","sonic hedgehog signaling molecule"]
2025-07-16Wikidata: query for gene aliasesPjotr Prins
2025-02-11Improve styling for images.Frederick Muriuki Muriithi
2025-02-11Improve styling for text.Frederick Muriuki Muriithi
2025-02-11Display the markdown with the default GN template.Frederick Muriuki Muriithi
2025-02-11Add a default page template and styling for genenetwork-like pages.Frederick Muriuki Muriithi
2025-02-11Add an endpoint for gnqa.Frederick Muriuki Muriithi
2024-11-19Change headers' list into alistFrederick Muriuki Muriithi
Change the headers list into an alist to ensure the static files are actually sent back rather than failing with a status 500 error.
2024-11-18Make paths ambivalent of working directory.Frederick Muriuki Muriithi
Before this commit, the paths depended on the working directory, meaning if you launched the service in the "wrong" working directory, then it could not find the appropriate files. This commit makes the service ambivalent of what the working directory was when it was launched.
2024-11-18Update invocation documentation. Remove unnecessary scripts/manifestFrederick Muriuki Muriithi
Since we can now use the package file, we no longer need the invocation scripts we used before, or the manifest I'd written.
2024-11-01Make error details into pairs.Frederick Muriuki Muriithi
2024-10-31Make error details into list of cons cellsFrederick Muriuki Muriithi
If the details are not cons cells, then the `json-build-object` bails with the error: In procedure car: Wrong type argument in position 1 (expecting pair): file-error This fixes that and allows a cleaner response.
2024-10-30Fix format for the +info+ pairsFrederick Muriuki Muriithi
Fix the format for the info pairs to avoid failure when accessing the root of the application.
2024-10-23web: added comment on pathPjotr Prins
2024-09-04Extend edit/commit end-points to push to bare repo.Munyoki Kilyungi
* web/view/markdown.scm: Export git-invoke. * web/webserver.scm [+global-repo+]: Delete. [+current-repo-path+]: New variable. (+cgit-repo-path+): New variable. (commit-file-handler): Commit changes to a normal repository and later puh to the bare repository. (controller): Uupdate "GET /edit" and "POST commit" to use the +current-repo+. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-09-04Set the branch name to a default value for github links.Munyoki Kilyungi
* web/view/markdown.scm (form-github-raw-url): Make branch an optional value that defaults to "master". (form-github-edit-url): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-09-04Remove dead comments.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-09-04Move constants to the top of the file.Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-09-04Properly unquote lists using ","Munyoki Kilyungi
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-08-13Apply guix style linting to file.Munyoki Kilyungi
* web/sxml.scm: Use guix style to lint this file. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
2024-08-12Bugfix: return correct status code for edit api.Alexander_Kabui
generated by cgit-pink 1.4.1 (git 2.36.1) at 2026-03-08 02:40:12 +0000